View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_15 (Length: 541)
Name: NF20179_high_15
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_15 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 406586 - 407126
Alignment:
| Q |
1 |
ctcaaatttatttctcctagagcatacagtttgtaagcactagctagatggtatatcctatcaagatcatagcttgacttctaacatctagcttttcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
406586 |
ctcaaatttatttctcctagagcatacagtttgtaagcactagctagatggtatatcctatcaagatcatagcttgacttctaacatctagcttttcttg |
406685 |
T |
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| Q |
101 |
tttgttaagaaacaagtttgaaacatagtgaaccaagtttttaagatggttataacacttggttgagctaaaagattaaagaagttgaaggtctatggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
406686 |
tttgttaagaaacaagtttgaaacatagtgaaccaagtttttaagatggttataacacttggttgagctaaaagattaaagaagttgaaggtttatggtt |
406785 |
T |
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| Q |
201 |
tgaatcatgataagagagaaaatagatattgagttcgatacttggttcacactaaaaaatactcattccatcctaaaataattgactttgtttgacaata |
300 |
Q |
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| T |
406786 |
tgaatcatgataagagagaaaatagatattgagttcgatacttggttcacactaaaaaatactcattccatcctaaaataattgactttgtttgacaata |
406885 |
T |
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| Q |
301 |
tgcattattcaaatcatatactttaatcatattttttcattgccataactaccaccaccaaccataaaaaagatcatgccttctttaaatctccaaggaa |
400 |
Q |
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| T |
406886 |
tgcattattcaaatcatatactttaatcatattttttcattgccataactaccaccaccaaccataaaaaagatcatgccttctttaaatctccaaggaa |
406985 |
T |
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| Q |
401 |
ctaccaccaccaacccaattaaattatatacatgccataactacacgtagctgcacatctttggcaataaaggaaccaaatctgagcactacaaacaccc |
500 |
Q |
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| T |
406986 |
ctaccaccaccaacccaattaaattatatacatgccataactacacgtagctgcacatctttggcaataaaggaaccaaatctgagcactacaaacaccc |
407085 |
T |
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| Q |
501 |
accatagcagctccacaaacagggataagatcacaccaaaa |
541 |
Q |
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| T |
407086 |
accatagcagctccacaaacagggataagatcacaccaaaa |
407126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 376 - 519
Target Start/End: Complemental strand, 19924205 - 19924062
Alignment:
| Q |
376 |
atgccttctttaaatctccaaggaactaccaccaccaacccaattaaattatatacatgccataactacacgtagctgcacatctttggcaataaaggaa |
475 |
Q |
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| T |
19924205 |
atgccttctttaaaactccaaggaactaccaccaccaacccaattaaactatataccagccataactacacgcagctgcacacctttggcaataaaagaa |
19924106 |
T |
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| Q |
476 |
ccaaatctgagcactacaaacacccaccatagcagctccacaaa |
519 |
Q |
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| T |
19924105 |
ccaaatctgagcactaaaagcacccagcatagcagctccacaaa |
19924062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 420 - 501
Target Start/End: Complemental strand, 18058714 - 18058633
Alignment:
| Q |
420 |
taaattatatacatgccataactacacgtagctgcacatctttggcaataaaggaaccaaatctgagcactacaaacaccca |
501 |
Q |
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| T |
18058714 |
taaattatataccagccataactacaccgagctgcacacctttggcagtaaaagaaccaaatctgagaactaaaaacaccca |
18058633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 18059467 - 18059416
Alignment:
| Q |
376 |
atgccttctttaaatctccaaggaactaccaccaccaacccaattaaattat |
427 |
Q |
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| T |
18059467 |
atgccttctttaaaactccaaggaactaccaccatcaatccaattaaattat |
18059416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 49431553 - 49431507
Alignment:
| Q |
290 |
gtttgacaatatgcattattcaaatcatatactttaatcatattttt |
336 |
Q |
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| T |
49431553 |
gtttgacaatatgcactattcaaattacatacttttatcatattttt |
49431507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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