View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_high_19 (Length: 491)
Name: NF20179_high_19
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 33859831 - 33860242
Alignment:
| Q |
11 |
cagagagtttaaagaaaaatgcaagagcagattcgctaggcaagcatcaatttgtcaagctaatcatggtggtttgatgacttgattggatgagctatca |
110 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33859831 |
cagagagtttaaagcaaaatgcaagagcagattcgctaagcaagcatcaatttgccaagctaatcatggtggtttgatgacttgattggatgagctatca |
33859930 |
T |
|
| Q |
111 |
ttttcctccatctgaagaaagctcagattctctacacgagcataactttgtctatcgacttcccacttataagaattctataaatagatgtcaccacttc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33859931 |
ttttcctccatctgaagaaagctcagattctctacacgaacataactttgtctatcgaattcccacttataagaattctataaatagatgtcaccacttc |
33860030 |
T |
|
| Q |
211 |
ttttcaaggaggagtcatacaccatagaagaactcataaaccaagaaagggagagacaaaatgatctagggaagaaagatacaacgaaggagaat-ggga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33860031 |
ttttcaaggaggagtcatacaccatagaagaactcataaaccaagaaagggagagacaaaatgatctagggaagaaagatacaacgaaggagaatgggga |
33860130 |
T |
|
| Q |
310 |
atcatcttcggggtctaatctcttcccttcttgtttcttattataagactatgcataactaatcctctctatcttttggcttaagcatagtttctatgac |
409 |
Q |
| |
|
||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
33860131 |
atcttctttggggtttaatctcttcccttcttgtttcttattataagactatgcataactaatcctctctatcttttggattaagcatagtttctaatac |
33860230 |
T |
|
| Q |
410 |
tcttttgtagat |
421 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33860231 |
tcttttgtagat |
33860242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 31263 - 31221
Alignment:
| Q |
98 |
ggatgagctatcattttcctccatctgaagaaagctcagattc |
140 |
Q |
| |
|
||||||||||||| |||||||||| | |||||||||||||||| |
|
|
| T |
31263 |
ggatgagctatcactttcctccatttaaagaaagctcagattc |
31221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University