View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_high_24 (Length: 469)
Name: NF20179_high_24
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 55573600 - 55573883
Alignment:
| Q |
16 |
tctctttcatcctaacatagtgcaggtaattaattaactatttttatctcagaaaggtttaattaattaattaattcctgtgtccacttcttgtcataat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
55573600 |
tctctttcatcctaacatagtgcaggtaattaattaactatttttatctcagaaaggtttaa----ttaattaattcctgtgtccacttcttgtcataat |
55573695 |
T |
|
| Q |
116 |
actcttttttggtttattttcttgtgttggtttggatttcacaggaaatcacaaggttccttattttgaagaaatgatattttgacatcaaatacgacat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55573696 |
actcttttttggtttattttcttgtgttggtttagatttcacaggaaatcacaaggttccttattttgaagaaatgatattttgacatcaaatacgacat |
55573795 |
T |
|
| Q |
216 |
cttttggtttt----tatgtgtattttttaaattcacgtaagttgtaagagataaaaagtaacaaagagataaagataaacatatacg |
299 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55573796 |
cttttggtttttatgtatgtgtattttttaaattcacgtaagttgtaagagataaaaagtaacaaagagataaagataaacatatacg |
55573883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 346 - 460
Target Start/End: Original strand, 55573930 - 55574044
Alignment:
| Q |
346 |
aaagactcacaaccacttaccactttagtgggggaaaatttaataccaacttgatgtcaaatttctttacttttgtgtcatgtttttacggatgcaacat |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55573930 |
aaagactcacaaccacttaccactttagtgggggaaaatttaataccaacttgatgtcaaatttctttacttttgtgtcatgtttttacggatgcaacat |
55574029 |
T |
|
| Q |
446 |
gtttgccagtattat |
460 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
55574030 |
gtttggcagtattat |
55574044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 33035731 - 33035869
Alignment:
| Q |
43 |
aattaattaactatttttatctcagaaaggtttaattaattaattaattcctgtgtccacttcttgtcataatactcttttttggtttattttcttgtgt |
142 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||| |||||||| |||||| |
|
|
| T |
33035731 |
aattaattaactatttt-atctcagaaaggtttaattaattaatgaattcttgtgtccacttcttgtcctaatagtcttttttgttttattttattgtgt |
33035829 |
T |
|
| Q |
143 |
tggtttggatttcacaggaaatcacaaggttccttatttt |
182 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
33035830 |
tggtttggatttcaaaggaaatcacgaggttccttatttt |
33035869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 20809076 - 20809151
Alignment:
| Q |
218 |
tttggtttttatgtgtattttttaaattcacgtaagttgtaagagataaaaagtaacaaagagataaagataaaca |
293 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| ||||||| ||||||||||||| | ||||||| |||| |||| |
|
|
| T |
20809076 |
tttggtttttgtgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagagagagatagagatgaaca |
20809151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 16560857 - 16560792
Alignment:
| Q |
231 |
tgtattttttaaattcacgtaagttgtaagagataaaaagtaacaaagagataaagataaacatat |
296 |
Q |
| |
|
||||||||||||| ||| ||||||||| |||||||||||| | ||||||||||||||| |||| |
|
|
| T |
16560857 |
tgtattttttaaactcatataagttgtatatgataaaaagtaaaagagagataaagataaatatat |
16560792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 6527458 - 6527418
Alignment:
| Q |
218 |
tttggtttttatgtgtattttttaaattcacgtaagttgta |
258 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||||| |
|
|
| T |
6527458 |
tttggtttttatgtgtattttttaaatgcatgcaagttgta |
6527418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 10313896 - 10313839
Alignment:
| Q |
218 |
tttggtttttatgtgtattttttaaattcacgtaagttgtaagagataaaaagtaaca |
275 |
Q |
| |
|
|||| ||||| |||||| |||| ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
10313896 |
tttgatttttgtgtgtaattttgaaattcatgtaagttgtacaagataaaaagtaaca |
10313839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University