View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_high_28 (Length: 446)

Name: NF20179_high_28
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_high_28
NF20179_high_28
[»] chr7 (15 HSPs)
chr7 (18-446)||(4711294-4711722)
chr7 (18-446)||(4845222-4845662)
chr7 (26-446)||(4653941-4654373)
chr7 (18-446)||(4696388-4696840)
chr7 (26-445)||(4864368-4864802)
chr7 (19-446)||(4673148-4673587)
chr7 (18-446)||(4783042-4783485)
chr7 (26-446)||(4637302-4637731)
chr7 (18-446)||(4815471-4815914)
chr7 (18-446)||(4644152-4644577)
chr7 (105-283)||(4663310-4663488)
chr7 (308-370)||(4631451-4631513)
chr7 (173-291)||(4667550-4667668)
chr7 (402-446)||(4631372-4631416)
chr7 (308-446)||(4667386-4667521)
[»] chr4 (1 HSPs)
chr4 (331-446)||(18925280-18925392)


Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 4711294 - 4711722
Alignment:
Q  18 gataactcaaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattccactcacaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711294 gataactcaaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattccactcacaa 4711393  T
Q  118 ccgcgcgtatctctctctcaaatttcacatactcattttctagcataactaacacccctgtttttattagccttcatttttacccaacttcataccaaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711394 ccgcgcgtatctctctctcaaatttcacatactcattttctagcatcactaacacccctgtttttattagccttcatttttacccaacttcataccaaaa 4711493  T
Q  218 ctttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagcccttattatgagaaggaaaaaatcaccaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711494 ctttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagcccttattatgagaaggaaaaaatcaccaaa 4711593  T
Q  318 gaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711594 gaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaa 4711693  T
Q  418 tcgaaattgtgtctatgccttcttttctc 446  Q
    |||||||||||||||||||||||||||||    
T  4711694 tcgaaattgtgtctatgccttcttttctc 4711722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 4845222 - 4845662
Alignment:
Q  18 gataactcaaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattccactcacaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| | |||||| ||||||    
T  4845222 gataactcaaatctctttaccttcattgaaccaaaaaccacaaatccatcttttaaatcatctcctaattccctttccaatatccaaattccattcacaa 4845321  T
Q  118 ccgcgcgtatctctctctcaaatttcacatactcattttctagcataactaacacccctgtttttattagccttcatttttacccaacttcataccaaaa 217  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||  |||   |||||||||||||| |||||||||||||||||||||||||||| ||    
T  4845322 ccgcgcatatctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttcatttttacccaacttcataccagaa 4845421  T
Q  218 ctttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaa 305  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||            || | |||  ||||    
T  4845422 ctttgatccctccaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttcactttggcttcatgacgaggtggaa 4845521  T
Q  306 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 405  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||| |||||||||||  | |  ||||||| ||||||||    
T  4845522 aaaattaccaaagaatattgcattcagatcaaaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaatcctttttatgctt 4845621  T
Q  406 tcattaacggaatcgaaattgtgtctatgccttcttttctc 446  Q
    || |||||||||||||| ||||||| |||||||||||||||    
T  4845622 tcgttaacggaatcgaagttgtgtcgatgccttcttttctc 4845662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 26 - 446
Target Start/End: Complemental strand, 4654373 - 4653941
Alignment:
Q  26 aaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattccactcacaaccgcgcgt 125  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||| | || ||| || |||||| || ||||   | |||||| |||||||||| |||    
T  4654373 aaatatctttactttcattgaaccaaaaaccacgaacccatctcttacaacaccacgtagttccctctcaaatactcaaattccattcacaaccgcacgt 4654274  T
Q  126 atctctctctcaaatttcacatactcattttctagcataactaacacccctgtttttattagccttcatttttacccaacttcataccaaaactttgatc 225  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||   ||||||||||||   |||||||||||||||| ||||| || ||||| ||||| |    
T  4654273 atctctctctcatatttcacatactcattttctaacatcactacttcccctgtttttaaccgccttcatttttaccctacttcgtatcaaaaatttgaac 4654174  T
Q  226 cctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaaaaaatcac 313  Q
    |||| ||||| |||||||||||  ||||||||||||| ||||| ||||||||||||||||  ||||            || ||||   ||||| ||||||    
T  4654173 cctcaaatgcacttttctctgttgaagtaaacaacaaacttacacttcttaaaaacttcaatccttcactttggattcatgatgatggggaaacaatcac 4654074  T
Q  314 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 413  Q
    ||||||||||||||| ||| || |||| ||| ||||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||     
T  4654073 caaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaaccattcaaatccttattatgctttcattaat 4653974  T
Q  414 ggaatcgaaattgtgtctatgccttcttttctc 446  Q
    ||||| ||| |||||||||||||||||||||||    
T  4653973 ggaattgaagttgtgtctatgccttcttttctc 4653941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 4696388 - 4696840
Alignment:
Q  18 gataactcaaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattccactcacaa 117  Q
    |||||| |||| |||||| |||||| ||||||||||||||||||| ||||||||| |  | |||||||  |||| || |||||| | |||||| ||||||    
T  4696388 gataacacaaaactcttttccttcaatgaaccaaaaaccacaaacacatctcttacaataccacctaacaccctctcaaatatccaaattccattcacaa 4696487  T
Q  118 ccgcgcgtatctctctctcaaatttcacatactcattttctagcataactaacacccctgtttttattagccttcatttttacccaacttcataccaaaa 217  Q
    |||| ||| ||||||||||||||||||||||||| ||| ||||||| ||||   ||||||||||| || |||||||||||||||| ||||| |||| |||    
T  4696488 ccgcacgtgtctctctctcaaatttcacatactcttttcctagcatcactacttcccctgtttttcttcgccttcatttttacccgacttcgtaccgaaa 4696587  T
Q  218 ctttga----------tccct--ccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------at 293  Q
    ||||||          |||||  | ||||| ||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||            ||    
T  4696588 ctttgaaccttctaattccctttcaaatgcacttttctctgttaaagtaaacaacaacgttacccttcttaaaaacttcaacccttctctttggttctat 4696687  T
Q  294 tatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatc 393  Q
     ||||  | ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| | ||||||||| || |||||||    
T  4696688 catgatgacgaaaaaatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatc 4696787  T
Q  394 cttattatgctttcattaacggaatcgaaattgtgtctatgccttcttttctc 446  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  4696788 cttattatgctttcattaacggaatagaagttgtgtcaatgccttcttttctc 4696840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 26 - 445
Target Start/End: Complemental strand, 4864802 - 4864368
Alignment:
Q  26 aaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattccactcacaaccgcgcgt 125  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||||  ||| || ||||| ||||||  |||||||||||||    
T  4864802 aaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattccatacacaaccgcgcgt 4864703  T
Q  126 atctctctctcaaatttcacatactcattttctagcataactaacacccctgtttttattagccttcatttttacccaacttcataccaaaactttgatc 225  Q
    ||||||||||||| ||||||||| |||||||||| ||| ||||   | ||||||||| || | ||||||||||||||||| || || ||||||||||| |    
T  4864702 atctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaacatcttatcaaaactttgaac 4864603  T
Q  226 cctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt--------att-atgagaa---ggaaaaaatcac 313  Q
    | || || ||  |||| || ||  |||||||||||||  ||||||||||||||||||||| |||||        ||| ||||  |   ||||||||||||    
T  4864602 cttcgaaagcatttttttcagttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcac 4864503  T
Q  314 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattc---caaacaacataaatcattcaaatccttattatgctttcatt 410  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||   | || || |||||||| ||||||||||||||||| ||||||    
T  4864502 caaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcatt 4864403  T
Q  411 aacggaatcgaaattgtgtctatgccttcttttct 445  Q
    || ||||| ||| | ||||||||||||||||||||    
T  4864402 aatggaatagaagtcgtgtctatgccttcttttct 4864368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 4673587 - 4673148
Alignment:
Q  19 ataactcaaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattccactcacaac 118  Q
    ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| | ||  |||||||||||| || |||||| |  |||||  ||||      
T  4673587 ataacacaaatctctttactttcattgaaccaaaaaccacatacccatctcttacaacacaacctaattccctctcaaatatccaagttccatacacaca 4673488  T
Q  119 cgcgcgtatctctctctcaaatttcacatactcattttctagcataactaacacccctgtttttattagccttcatttttacccaacttcataccaaaac 218  Q
    ||| ||| | ||||||||||||||||||||||||||||||||||| |||||  || |||||||| || |||||||||||||||||| || ||   ||| |    
T  4673487 cgcacgtgtttctctctcaaatttcacatactcattttctagcatcactaattccactgtttttcttcgccttcatttttacccaaatttatctaaaagc 4673388  T
Q  219 tttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaaa 306  Q
    |||||||||||||||||  |||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||            || || |  ||||||    
T  4673387 tttgatccctccaatgcaattttctctatcaaagttaacaacaatattacccttcttaaaaacttcaaccctttcctttggattcatgattatgaggaaa 4673288  T
Q  307 aaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgcttt 406  Q
     |||||||||||||| ||| || |||||||| || ||||||||||||| ||||| ||||||||||| || ||| ||  | ||||||  | | ||||||||    
T  4673287 caatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgcttt 4673188  T
Q  407 cattaacggaatcgaaattgtgtctatgccttcttttctc 446  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  4673187 cattaacggaatcgaaattgtgtcaatgccttcttttctc 4673148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 4783042 - 4783485
Alignment:
Q  18 gataactcaaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattccactcacaa 117  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||||||||||||| ||  |||||||||||| || |||||| | |||||| ||||||    
T  4783042 gataactctaatctcttttccttcattgaaccaaaaaatacaaacccatctcttaaaacaaaacctaattccctctcaaatatccaaattccattcacaa 4783141  T
Q  118 ccgcgcgtatctctctctcaaatttcacatactcattttct---agcataactaacacccctgtttttattagccttcatttttacccaacttcatacca 214  Q
    |||  |||  |||||||||||||||||||||||||||||||   | ||| |||||| || || ||||| || ||||||||||||||||||||||||| ||    
T  4783142 ccgtacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgccttcatttttacccaacttcatatca 4783241  T
Q  215 aaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaag 302  Q
    ||| |||||  ||||  |||| |||||||||||  |||||||||||||  ||||||||||||||||||||| |||||            || ||||  ||    
T  4783242 aaattttgaaacctcttatgcacttttctctgttgaagtaaacaacaacattacccttcttaaaaacttcaacccttcactttggcttcatcatgatgag 4783341  T
Q  303 gaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatg 402  Q
     |  | |||  ||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  |||||    
T  4783342 aatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgattcctagttatg 4783441  T
Q  403 ctttcattaacggaatcgaaattgtgtctatgccttcttttctc 446  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  4783442 ctttcattaacggaatcgaagttgtgtctatgccttcttttctc 4783485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 26 - 446
Target Start/End: Complemental strand, 4637731 - 4637302
Alignment:
Q  26 aaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattccactcacaaccgcgcgt 125  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||   |  | |||||||||| || |||||| |  |||||  ||||  ||| |||    
T  4637731 aaatctctttactttcattgaaccaaaaaccacaaacccatcttttaatgtacaagctaattccctctcaaatatccaagttccatacacacacgcacgt 4637632  T
Q  126 atctctctctcaaatttcacatactcattttctagcataactaacacccctgtttttattagccttcatttttacccaacttcataccaaaactttgatc 225  Q
     | ||||||||||||||||||||||||||||||||||| |||||  || |||||||| || | |||||||||||||| || || || ||||||||||| |    
T  4637631 gtttctctctcaaatttcacatactcattttctagcatcactaattccactgtttttcttcgtcttcatttttaccctacatcttatcaaaactttgaac 4637532  T
Q  226 cctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaaaaaatcac 313  Q
    | |||| |||  |||||||||||||||| ||| ||   |||||||||||||||||||||| |||||            ||| |||  | |||||||||||    
T  4637531 cttccagtgcaattttctctgtcaaagtgaacgac---cttacccttcttaaaaacttcaaccctttgctttggctctattttgatgacgaaaaaatcac 4637435  T
Q  314 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 413  Q
    ||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||| |||| |||||| || |||||||||| ||||||||| ||||||    
T  4637434 caaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaac 4637335  T
Q  414 ggaatcgaaattgtgtctatgccttcttttctc 446  Q
    || |||||| ||||||| |||||||||||||||    
T  4637334 gggatcgaagttgtgtcaatgccttcttttctc 4637302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 4815471 - 4815914
Alignment:
Q  18 gataactcaaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattccactcacaa 117  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||||||||||||| ||  |||||||||||| || |||| | | |||||| ||||||    
T  4815471 gataactctaatctcttttccttcattgaaccaaaaaatacaaacccatctcttaaaacaaaacctaattccctctcaaatacccaaattccattcacaa 4815570  T
Q  118 ccgcgcgtatctctctctcaaatttcacatactcattttct---agcataactaacacccctgtttttattagccttcatttttacccaacttcatacca 214  Q
    |||  |||  |||||||||||||||||||||||||||||||   | ||| |||||| || || ||||| || ||||||||||||||||||||||||| ||    
T  4815571 ccggacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgccttcatttttacccaacttcatatca 4815670  T
Q  215 aaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaag 302  Q
    ||| |||||  ||||  |||| |||||||||||  |||||||||||||  ||||||||||||||||||||| |||||            || ||||  ||    
T  4815671 aaattttgaaacctcttatgcacttttctctgttgaagtaaacaacaacattacccttcttaaaaacttcaacccttcactttggcttcatcatgatgag 4815770  T
Q  303 gaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatg 402  Q
     |  | |||  ||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  |||||    
T  4815771 aatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgagtcctagttatg 4815870  T
Q  403 ctttcattaacggaatcgaaattgtgtctatgccttcttttctc 446  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  4815871 ctttcattaacggaatcgaagttgtgtctatgccttcttttctc 4815914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 4644577 - 4644152
Alignment:
Q  18 gataactcaaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattccactcacaa 117  Q
    |||||| |||| |||||||| |||||||||||||||||||| || ||||||| |||| |||||| ||| ||||   | ||| ||    |||||  ||||     
T  4644577 gataacacaaaactctttactttcattgaaccaaaaaccactaatccatctcctaaaacatcacttaaatccc---caaatttcacagttccatacacac 4644481  T
Q  118 ccgcgcgtatctctctctcaaatttcacatactcattttctagcataactaacacccctgtttttattagccttcatttttacccaacttcataccaaaa 217  Q
     ||| ||| ||||| |||||||||| |||||||||||||||||||| |||    ||||||||||| || ||||| ||||||||||  | || || |||||    
T  4644480 acgcacgtgtctctttctcaaattttacatactcattttctagcatcactgtttcccctgtttttcttcgcctttatttttaccctgcatcgtatcaaaa 4644381  T
Q  218 ctttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaa 305  Q
     ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||            || ||||  || |     
T  4644380 ttttgaaccctcaaatgcacttttctctgtcaaagtaaacaacaatctcacccttcttcaaaacttcaacccttcactttggcttcatcatgatgagaat 4644281  T
Q  306 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 405  Q
    || |||| |||||| |||||||| ||||| ||| ||||||||||||||| |||||||||||||||  |||           ||||||  |  ||||||||    
T  4644280 aatatcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattcc-caca-----------tcaaatgttagttatgctt 4644193  T
Q  406 tcattaacggaatcgaaattgtgtctatgccttcttttctc 446  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  4644192 tcattaacggaatcgaagttgtgtctatgccttcttttctc 4644152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 105 - 283
Target Start/End: Complemental strand, 4663488 - 4663310
Alignment:
Q  105 attccactcacaaccgcgcgtatctctctctcaaatttcacatactcattttctagcataactaacacccctgtttttattagccttcatttttacccaa 204  Q
    |||||||||| |||||| |||||||| |||||||||||||||||||||||| ||| |||  |||    |||||||||| || |||||||||||||| |||    
T  4663488 attccactcaaaaccgcacgtatctcgctctcaaatttcacatactcatttcctaccatccctagttgccctgtttttcttcgccttcatttttactcaa 4663389  T
Q  205 cttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaactt 283  Q
    | || ||  |||||||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  4663388 catcttataaaaactttgaaccctccaatgcacttttctctgtcaaactaaacgacaatcttacccttcttaaaaactt 4663310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 4631513 - 4631451
Alignment:
Q  308 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 370  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4631513 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 4631451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 4667668 - 4667550
Alignment:
Q  173 ccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttaccctt 272  Q
    |||||||||| || |||| |||||||||||||| || || |||||||||||  ||||||| ||||| ||| | |||||||||   | ||| |||||||||    
T  4667668 ccctgtttttcttcgcctccatttttacccaacatcgtatcaaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaaccttaccctt 4667569  T
Q  273 cttaaaaacttcagccctt 291  Q
    || ||| |||| |||||||    
T  4667568 ctcaaagactttagccctt 4667550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 4631416 - 4631372
Alignment:
Q  402 gctttcattaacggaatcgaaattgtgtctatgccttcttttctc 446  Q
    |||||||| |||||||| || ||||||||||||||||||||||||    
T  4631416 gctttcatcaacggaattgagattgtgtctatgccttcttttctc 4631372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 446
Target Start/End: Complemental strand, 4667521 - 4667386
Alignment:
Q  308 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttc 407  Q
    ||||||||||||||||||||| || | ||||| |   ||||| |||  | ||||||||||||| || |||| ||| || | |||| ||| |   ||||||    
T  4667521 aatcaccaaagaatattgcatccataccaaacaaggggagaaactagacgtaactttcattcccaaaaacacaaaccaattaaatgctttt---gctttc 4667425  T
Q  408 attaacggaatcgaaattgtgtctatgccttcttttctc 446  Q
    || |||||||| || |||||||||||||| |||||||||    
T  4667424 atcaacggaattgagattgtgtctatgccgtcttttctc 4667386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 446
Target Start/End: Original strand, 18925280 - 18925392
Alignment:
Q  331 aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc 430  Q
    |||| ||||||| ||||||| |||  ||||||||||||||||||| |||||||||  ||||  |   |||||||||||| |||||||| || || |||||    
T  18925280 aaatgaaaccaactgagaagttaaatataactttcattccaaacaccataaatcaaccaaaggc---ttatgctttcatcaacggaattgagatcgtgtc 18925376  T
Q  431 tatgccttcttttctc 446  Q
     |||||||||||||||    
T  18925377 catgccttcttttctc 18925392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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