View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_high_35 (Length: 410)

Name: NF20179_high_35
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_high_35
NF20179_high_35
[»] chr2 (28 HSPs)
chr2 (48-399)||(29908306-29908646)
chr2 (59-237)||(29132589-29132767)
chr2 (19-165)||(25685967-25686113)
chr2 (59-268)||(8556161-8556370)
chr2 (19-165)||(24937311-24937457)
chr2 (47-237)||(6903658-6903847)
chr2 (19-189)||(13785046-13785217)
chr2 (107-268)||(12874166-12874327)
chr2 (95-237)||(4616627-4616770)
chr2 (96-237)||(5814525-5814668)
chr2 (96-237)||(41192373-41192515)
chr2 (96-237)||(32737862-32738004)
chr2 (62-156)||(12967418-12967510)
chr2 (96-225)||(34619891-34620021)
chr2 (128-236)||(5290722-5290831)
chr2 (95-164)||(20149585-20149654)
chr2 (95-230)||(37057161-37057297)
chr2 (101-192)||(28266006-28266097)
chr2 (96-237)||(1887873-1888015)
chr2 (145-237)||(16710243-16710335)
chr2 (96-218)||(6728592-6728715)
chr2 (96-237)||(21083723-21083864)
chr2 (62-126)||(22495861-22495925)
chr2 (62-156)||(18394759-18394851)
chr2 (143-191)||(37891765-37891814)
chr2 (62-156)||(11713156-11713248)
chr2 (198-241)||(11815517-11815560)
chr2 (205-241)||(29908451-29908487)
[»] chr3 (33 HSPs)
chr3 (19-286)||(25574731-25574999)
chr3 (48-268)||(48086766-48086986)
chr3 (47-287)||(39415249-39415490)
chr3 (99-237)||(6755709-6755847)
chr3 (61-237)||(47560329-47560509)
chr3 (172-283)||(2182556-2182668)
chr3 (99-284)||(49742092-49742279)
chr3 (99-237)||(6462950-6463088)
chr3 (96-284)||(41649853-41650043)
chr3 (95-237)||(7956251-7956393)
chr3 (148-284)||(23029554-23029692)
chr3 (95-243)||(14995134-14995283)
chr3 (96-237)||(49501522-49501664)
chr3 (61-237)||(50561399-50561574)
chr3 (62-156)||(2325399-2325491)
chr3 (91-192)||(49303208-49303310)
chr3 (62-156)||(44833623-44833715)
chr3 (61-184)||(8628438-8628560)
chr3 (62-156)||(42947563-42947655)
chr3 (62-156)||(53824490-53824582)
chr3 (99-232)||(25745132-25745265)
chr3 (62-119)||(35485478-35485535)
chr3 (62-156)||(16967767-16967859)
chr3 (96-189)||(2447597-2447691)
chr3 (167-209)||(37282182-37282224)
chr3 (61-193)||(32211122-32211255)
chr3 (178-237)||(53401547-53401606)
chr3 (143-236)||(33448598-33448691)
chr3 (204-241)||(29523212-29523249)
chr3 (205-241)||(2182591-2182627)
chr3 (205-237)||(23029596-23029628)
chr3 (205-241)||(48086791-48086827)
chr3 (205-237)||(49742205-49742237)
[»] chr1 (35 HSPs)
chr1 (19-285)||(41871638-41871905)
chr1 (19-254)||(48566695-48566930)
chr1 (48-211)||(49597173-49597336)
chr1 (59-284)||(39222609-39222835)
chr1 (61-284)||(46923684-46923908)
chr1 (61-237)||(3660133-3660309)
chr1 (59-235)||(21482862-21483038)
chr1 (47-163)||(46178669-46178785)
chr1 (95-235)||(47983638-47983778)
chr1 (99-237)||(5770556-5770694)
chr1 (47-192)||(11012135-11012281)
chr1 (95-237)||(18843968-18844110)
chr1 (99-237)||(5766817-5766955)
chr1 (96-237)||(33686534-33686676)
chr1 (95-237)||(1671316-1671458)
chr1 (96-237)||(7014764-7014906)
chr1 (103-236)||(20447122-20447255)
chr1 (103-236)||(20532885-20533018)
chr1 (98-237)||(30858451-30858591)
chr1 (62-156)||(50065661-50065753)
chr1 (48-237)||(23602898-23603090)
chr1 (128-237)||(10308428-10308537)
chr1 (61-189)||(9343499-9343627)
chr1 (99-237)||(12926782-12926921)
chr1 (95-237)||(22605393-22605536)
chr1 (61-184)||(26013639-26013762)
chr1 (96-195)||(43138639-43138739)
chr1 (62-156)||(39650396-39650488)
chr1 (164-284)||(30308285-30308404)
chr1 (96-193)||(15399068-15399166)
chr1 (62-127)||(47485614-47485679)
chr1 (145-237)||(3752866-3752958)
chr1 (59-138)||(30308400-30308479)
chr1 (205-237)||(39222651-39222683)
chr1 (205-241)||(41871681-41871717)
[»] chr4 (53 HSPs)
chr4 (19-287)||(38131342-38131611)
chr4 (61-284)||(49065506-49065731)
chr4 (47-266)||(27761058-27761291)
chr4 (61-284)||(21713121-21713345)
chr4 (61-237)||(42038969-42039145)
chr4 (19-161)||(31823039-31823182)
chr4 (61-193)||(32935683-32935815)
chr4 (103-237)||(9242917-9243051)
chr4 (61-237)||(2777929-2778106)
chr4 (59-184)||(372703-372828)
chr4 (61-237)||(13856018-13856193)
chr4 (95-237)||(42118929-42119072)
chr4 (96-237)||(43502275-43502417)
chr4 (58-189)||(1227891-1228023)
chr4 (61-237)||(31936280-31936454)
chr4 (96-237)||(54703592-54703734)
chr4 (101-237)||(14289664-14289800)
chr4 (99-237)||(24608148-24608286)
chr4 (96-237)||(52789350-52789492)
chr4 (172-268)||(31822963-31823059)
chr4 (98-237)||(37694504-37694644)
chr4 (61-237)||(49261739-49261918)
chr4 (61-233)||(13867740-13867910)
chr4 (62-156)||(33161827-33161919)
chr4 (95-237)||(34939348-34939491)
chr4 (95-237)||(33985438-33985581)
chr4 (96-189)||(51242813-51242907)
chr4 (47-119)||(18414118-18414190)
chr4 (61-156)||(53265990-53266083)
chr4 (62-156)||(12572565-12572657)
chr4 (47-237)||(14990249-14990439)
chr4 (99-193)||(40962687-40962782)
chr4 (62-156)||(47043776-47043868)
chr4 (96-237)||(54808994-54809136)
chr4 (61-156)||(14329020-14329115)
chr4 (62-121)||(46814084-46814143)
chr4 (179-241)||(21058683-21058745)
chr4 (62-127)||(28796846-28796911)
chr4 (62-127)||(36174367-36174432)
chr4 (106-201)||(47020057-47020152)
chr4 (205-239)||(26973372-26973406)
chr4 (204-242)||(32310356-32310394)
chr4 (152-237)||(36046938-36047024)
chr4 (179-241)||(42563153-42563215)
chr4 (61-111)||(46567339-46567389)
chr4 (204-241)||(850633-850670)
chr4 (176-237)||(8932529-8932589)
chr4 (204-241)||(39463078-39463115)
chr4 (205-241)||(21058711-21058747)
chr4 (205-241)||(38131387-38131423)
chr4 (95-186)||(45042998-45043090)
chr4 (205-241)||(48577410-48577446)
chr4 (95-174)||(52032691-52032771)
[»] chr8 (22 HSPs)
chr8 (48-282)||(34471536-34471770)
chr8 (71-284)||(43693531-43693745)
chr8 (61-234)||(23542699-23542872)
chr8 (96-237)||(5913106-5913248)
chr8 (106-238)||(4759208-4759341)
chr8 (47-237)||(43835266-43835458)
chr8 (95-237)||(1217746-1217889)
chr8 (151-237)||(15743234-15743321)
chr8 (104-237)||(42182615-42182749)
chr8 (128-237)||(9039620-9039730)
chr8 (101-237)||(4322651-4322788)
chr8 (58-131)||(4639835-4639908)
chr8 (95-157)||(2766852-2766914)
chr8 (96-237)||(35161562-35161702)
chr8 (62-156)||(28704040-28704133)
chr8 (100-193)||(3964008-3964100)
chr8 (62-127)||(43635334-43635399)
chr8 (205-241)||(34471694-34471730)
chr8 (205-239)||(5944125-5944159)
chr8 (179-241)||(20520418-20520480)
chr8 (207-240)||(20669802-20669835)
chr8 (142-237)||(1931343-1931439)
[»] chr6 (18 HSPs)
chr6 (47-255)||(319161-319369)
chr6 (61-237)||(13312541-13312717)
chr6 (95-233)||(23912240-23912378)
chr6 (95-237)||(30634104-30634247)
chr6 (96-237)||(11598974-11599116)
chr6 (95-235)||(3515207-3515348)
chr6 (62-158)||(2419754-2419849)
chr6 (61-184)||(24173565-24173688)
chr6 (62-156)||(14153552-14153644)
chr6 (63-156)||(16444465-16444556)
chr6 (127-184)||(17399041-17399098)
chr6 (62-127)||(35053532-35053597)
chr6 (142-202)||(9521402-9521462)
chr6 (204-241)||(7526809-7526846)
chr6 (69-156)||(14830590-14830675)
chr6 (198-241)||(4362406-4362449)
chr6 (163-237)||(1077587-1077660)
chr6 (205-241)||(7526807-7526843)
[»] chr7 (28 HSPs)
chr7 (47-254)||(18239349-18239556)
chr7 (57-266)||(41219327-41219536)
chr7 (118-287)||(27874038-27874208)
chr7 (101-284)||(39476435-39476619)
chr7 (47-237)||(8260834-8261025)
chr7 (61-208)||(37524113-37524260)
chr7 (101-208)||(34354385-34354492)
chr7 (95-237)||(39283944-39284087)
chr7 (59-193)||(21153753-21153887)
chr7 (96-237)||(4035142-4035284)
chr7 (131-237)||(29714254-29714359)
chr7 (96-237)||(3742360-3742498)
chr7 (96-210)||(37449984-37450099)
chr7 (95-208)||(14678288-14678402)
chr7 (62-127)||(26502218-26502283)
chr7 (62-127)||(26590431-26590496)
chr7 (48-185)||(35126179-35126316)
chr7 (104-184)||(21613032-21613112)
chr7 (62-121)||(48212011-48212070)
chr7 (62-127)||(1537033-1537099)
chr7 (62-126)||(38791072-38791137)
chr7 (205-241)||(38455066-38455102)
chr7 (147-191)||(30362767-30362812)
chr7 (62-127)||(31826015-31826080)
chr7 (95-163)||(33802972-33803040)
chr7 (204-241)||(38455068-38455105)
chr7 (107-191)||(40144784-40144869)
chr7 (205-241)||(27874127-27874163)
[»] chr5 (27 HSPs)
chr5 (19-222)||(41758626-41758829)
chr5 (61-284)||(1172892-1173116)
chr5 (59-237)||(6427238-6427415)
chr5 (61-237)||(7083928-7084104)
chr5 (61-235)||(28784726-28784900)
chr5 (61-192)||(25898634-25898765)
chr5 (96-237)||(1081878-1082020)
chr5 (61-237)||(11125740-11125916)
chr5 (61-189)||(10532795-10532923)
chr5 (96-237)||(2786687-2786829)
chr5 (130-237)||(16100835-16100942)
chr5 (96-237)||(12144001-12144143)
chr5 (96-237)||(18172125-18172267)
chr5 (95-237)||(40033990-40034134)
chr5 (101-225)||(20202605-20202728)
chr5 (96-218)||(34954022-34954145)
chr5 (96-192)||(7662194-7662291)
chr5 (95-184)||(10399254-10399343)
chr5 (62-127)||(40017140-40017205)
chr5 (102-221)||(43147422-43147542)
chr5 (100-190)||(2599801-2599891)
chr5 (61-191)||(19043886-19044016)
chr5 (62-156)||(3461371-3461463)
chr5 (206-241)||(19401898-19401933)
chr5 (62-120)||(1974388-1974446)
chr5 (205-241)||(2740562-2740598)
chr5 (210-242)||(3461481-3461513)
[»] scaffold0217 (1 HSPs)
scaffold0217 (59-237)||(25553-25732)
[»] scaffold0753 (1 HSPs)
scaffold0753 (103-234)||(3956-4088)
[»] scaffold0861 (1 HSPs)
scaffold0861 (101-237)||(3721-3857)
[»] scaffold0223 (1 HSPs)
scaffold0223 (49-190)||(16026-16168)
[»] scaffold0051 (1 HSPs)
scaffold0051 (96-225)||(20060-20190)
[»] scaffold1455 (1 HSPs)
scaffold1455 (58-160)||(158-258)
[»] scaffold1212 (1 HSPs)
scaffold1212 (212-241)||(1801-1830)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 48 - 399
Target Start/End: Complemental strand, 29908646 - 29908306
Alignment:
Q  48 gtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtg 147  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||| ||    
T  29908646 gtgtaaaggttgtaaaaaacgtgtggattgaaagttgaaaacctgaccaccgtccaaaaaacgtttgttcttcagttctaaccaccggccaacgtgcatg 29908547  T
Q  148 agttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagag 247  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |    
T  29908546 agttaactcgcgcataggccagtggcgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtaacttaacttgcgcaaggg 29908447  T
Q  248 catttttgatatagctgca-ggtgcgagcaaaatgtgctggcaaaatgtgcatgataaagagcaggattctatttcaac-agagtccctaggtcggtcta 345  Q
    ||||||||  ||||||||| || |||||||||||||||||             ||| |||||||  ||||||||||||| ||||||||||||||||||||    
T  29908446 catttttggcatagctgcagggcgcgagcaaaatgtgctg-------------gatgaagagcaacattctatttcaacaagagtccctaggtcggtcta 29908360  T
Q  346 gttggccccattgggcaggcccaatctattttgacagccatccaccttgagaat 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29908359 gttggccccattgggcaggcccaatctattttgacagccatccaccttgagaat 29908306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 59 - 237
Target Start/End: Original strand, 29132589 - 29132767
Alignment:
Q  59 gtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgc 158  Q
    |||||||| ||||||| |||| |||||||| |||| ||  | |||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  29132589 gtaaaaaatgtgtggaatgaatgttgaaaaactgaccaaagaccaaaaaacgtttgttcttcagctctgaccaccggccaacgtgcgtgagttaactcgc 29132688  T
Q  159 gcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||||||| |||||||||||||||||||||| |||  ||||||||||||  ||||||||||||  |||||||||||||    
T  29132689 gcataggccggtggtgcgtgacttaagtcacgtagaacttataaggtgcgttagttaagtcacgttgcgtgacttaact 29132767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 25685967 - 25686113
Alignment:
Q  19 ataaccaccataaacgtggtcnnnnnnncgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttct 118  Q
    |||||||||||||| ||||||       |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||     
T  25685967 ataaccaccataaatgtggtcaaaaatacgtgtaaaggttgtaaaaaacgtgtggaatgaaggttgaaaacctgaccaccgtccaaaaaacgtttgttca 25686066  T
Q  119 tcaattctgaccaccggccagcgtgcgtgagttaactcgcgcatagg 165  Q
      | ||||||||||| |||| ||||||||||||||||||||||||||    
T  25686067 agagttctgaccaccagccaacgtgcgtgagttaactcgcgcatagg 25686113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 268
Target Start/End: Complemental strand, 8556370 - 8556161
Alignment:
Q  59 gtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgc 158  Q
    |||||||  ||||||| |||| |||| ||| |||||||  | ||||||||  |||||||||||  |||||||||||||||  ||| |||||| ||||||     
T  8556370 gtaaaaattgtgtggaatgaatgttggaaaactgatcaaggaccaaaaaatatttgttcttcagctctgaccaccggccatggtgtgtgagtaaactcgt 8556271  T
Q  159 gcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgata 258  Q
    ||||||| || || ||||||||||||||||| || || ||||||||||||| ||||||||||||  ||||||||||||| ||| |||||||||||||  |    
T  8556270 gcatagggcattgatgcgtgacttaagtcacacatagattataaggtgcgccagttaagtcacgttgcgtgacttaactagcgcaagagcatttttggca 8556171  T
Q  259 tagctgcagg 268  Q
    | ||||||||    
T  8556170 tggctgcagg 8556161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 24937311 - 24937457
Alignment:
Q  19 ataaccaccataaacgtggtcnnnnnnncgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttct 118  Q
    |||||||||||||| ||||||       ||||||||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||     
T  24937311 ataaccaccataaatgtggtcaaaaatacgtgtaaagtttgtaaacaacgtgtggaatgaaggttgaaaacctgaccaccgtccaaaaaacgtttgttca 24937410  T
Q  119 tcaattctgaccaccggccagcgtgcgtgagttaactcgcgcatagg 165  Q
      | |||||| ||||||||| ||||||||||||||||||||||||||    
T  24937411 agagttctgatcaccggccaacgtgcgtgagttaactcgcgcatagg 24937457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 6903658 - 6903847
Alignment:
Q  47 cgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgt 146  Q
    |||||||| || || ||||||||||  |||||  ||||||||||||| ||  ||  |||||| |||||||||||| ||||||||||||||||   || ||    
T  6903658 cgtgtaaaagtggttaaaaacgtgttaattgagtgttgaaaacctgaccaaagtgaaaaaaatgtttgttcttcagttctgaccaccggccaaa-tgtgt 6903756  T
Q  147 gagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |||||||||||||||  |||||||||||||||||||||| |||||| || ||||| |||||   |||||||||||||||||||||||||||    
T  6903757 gagttaactcgcgcaccggccagtggtgcgtgacttaagccacgcatagattatatggtgcatgagttaagtcacgcagcgtgacttaact 6903847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 13785217 - 13785046
Alignment:
Q  19 ataaccaccataaacgtggtcnnnnnnncgtgtaaaggttgtaaaaaa-cgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttc 117  Q
    |||||||||||||| ||||||       |||||| | ||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||||    
T  13785217 ataaccaccataaatgtggtcaaaaaaacgtgtagaagttgtaaaaaaacgtgtagattgaaagttgaaaacctgaccaccgtccaaaaaacgtttgttc 13785118  T
Q  118 ttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcac 189  Q
     | |  || ||||| |||||| ||||||||||||||||||| | ||||||| ||||||||||||||| ||||    
T  13785117 atgagctcagaccatcggccaacgtgcgtgagttaactcgcacttaggccaatggtgcgtgacttaactcac 13785046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 107 - 268
Target Start/End: Complemental strand, 12874327 - 12874166
Alignment:
Q  107 aacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtg 206  Q
    |||||||||||||||  ||| |||||||  ||   |||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |    
T  12874327 aacgtttgttcttcagctcttaccaccgctcaagttgcgtgagttaactcgcgcataggtcagtggtgcgtgacttaagtcacgtagagattataaggcg 12874228  T
Q  207 cgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatatagctgcagg 268  Q
    |||  |||||||||||  || ||||||||||  || |||||||| |||| ||| | ||||||    
T  12874227 cgctggttaagtcacgttgcatgacttaactaacgcaagagcatatttggtatggttgcagg 12874166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 4616627 - 4616770
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcag 193  Q
    |||||||| |||||||||||| ||||| || | ||||||||||| | ||||  |||||||||||| | |||| |||||| ||||||||||||||||||||    
T  4616627 caccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggctcagtggggcgtgacttaagtcacgcag 4616726  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || || | | |||||  ||||||||||| |||||||||||||||    
T  4616727 agcttgtgaagtgcgtgagttaagtcacacagcgtgacttaact 4616770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 5814525 - 5814668
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgactt-aagtcacgcag 193  Q
    ||||||||| |||||||||| ||||| || | ||||||||||| | ||||  |||||||||||| |||||| |||| ||||||||||| |||||||||||    
T  5814525 accgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtataggctcagtagtgcgtgacttaaagtcacgcag 5814624  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || || | |||||||  ||||||||| ||| |||||||||||||    
T  5814625 agcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaact 5814668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 41192373 - 41192515
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||| | || | ||||||||||| | ||||  ||||||||||| ||||||| |||||||| |||||||||||||| ||||    
T  41192373 accgtccaagaaacgtttgtgctttagtttttaccaccggccaacttgcgcaagttaactcgcacataggctcagtggtgtgtgacttaagtcacacaga 41192472  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | |||||||  ||||||||| ||| |||||||||||||    
T  41192473 gcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaact 41192515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 32737862 - 32738004
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | |||| |||||| | ||||  ||||||||| |||| |||| |||||||||||||||||||||||||| |    
T  32737862 accgtccaagaaacgtttgtgcttcagtttttaccatcggccaacttgcgcaagttaactcacgcagaggctcagtggtgcgtgacttaagtcacgcaca 32737961  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
      ||||||||||||    ||||||||||| | |||||||||||    
T  32737962 acttataaggtgcgtttattaagtcacgctgtgtgacttaact 32738004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 12967510 - 12967418
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| |||||||| |||| ||| | ||||||||||||||||||||||||||   ||||||||| |  ||||||||||||||    
T  12967510 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaacgtttgttcttcaattct--acaccggccaactagcgtgagttaactc 12967418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 34619891 - 34620021
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | | ||||||||| | || |  ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  34619891 accgtccaagaaacgtttgtgcttcagtttttatcaccggccaacttgtgcaagttaactcgcgcataggctcagtagtgcgtgacttaagtcacgcaga 34619990  T
Q  195 ggttataaggtgcgcaagttaagtcacgcag 225  Q
    | || | |||||||  | |||| ||||||||    
T  34619991 gcttgtgaggtgcgtgacttaactcacgcag 34620021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 5290722 - 5290831
Alignment:
Q  128 accaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagc 226  Q
    ||||||| ||| | |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||   |||| |   ||||||||||| ||||    
T  5290722 accaccgtccaacttgcgcgagttaactcacgcataggctcagtggtgcgtgacttaagtcacgcagagcttgagaggtacatgagttaagtcacacagc 5290821  T
Q  227 gtgacttaac 236  Q
    ||||||||||    
T  5290822 gtgacttaac 5290831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 20149585 - 20149654
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcatag 164  Q
    |||||| |||||||||||||||||||| || ||||||  ||||| |||||||||||||||||||||||||    
T  20149585 caccgttcaaaaaacgtttgttcttcagttatgaccattggccaacgtgcgtgagttaactcgcgcatag 20149654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 230
Target Start/End: Complemental strand, 37057297 - 37057161
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggcc-agtggtgcgtgacttaagtcacgcag 193  Q
    |||||||| |||||||||||| ||||| || | ||||||  | | | ||| | |||||||||||| | || |  ||||||||||||||||||||||||||    
T  37057297 caccgtcccaaaaacgtttgtgcttcagtttttaccaccaactaacttgcataagttaactcgcgtaaagacttagtggtgcgtgacttaagtcacgcag 37057198  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtga 230  Q
    || || | |||||||  ||||||||||||||||||||    
T  37057197 agcttgtgaggtgcgtgagttaagtcacgcagcgtga 37057161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 28266097 - 28266006
Alignment:
Q  101 ccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgca 192  Q
    |||||||| |||||||||||   |||||||||||  || |||||||||||||||||||||| | | |||||||||||||| ||| |||||||    
T  28266097 ccaaaaaatgtttgttcttcgtctctgaccaccgatcaacgtgcgtgagttaactcgcgcacatgtcagtggtgcgtgacctaactcacgca 28266006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 1888015 - 1887873
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | |||||||| || | ||||  |||||||||||||||| |  |||| | |||||||||||||||||||||    
T  1888015 accgtccaagaaacgtttgtgcttcagtttttaccaccgggcaacttgcgcaagttaactcgcgcatatgatcagttgggcgtgacttaagtcacgcaga 1887916  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | |||||||   ||||||| |||  |||||||||||||    
T  1887915 gcttgtgaggtgcgtgtgttaagtgacgttgcgtgacttaact 1887873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 16710243 - 16710335
Alignment:
Q  145 gtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||||||||||| ||| | | |||||||||||||||||| |||||||||   |||||| ||||  |||||||||| || |||||||||||||    
T  16710243 gtgagttaactcgtgcacatgtcagtggtgcgtgacttaactcacgcagaacatataagatgcgttagttaagtcatgctgcgtgacttaact 16710335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 6728715 - 6728592
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||| ||| ||||| || | ||||||||||| | ||||  ||||||||||||||||||| |||||||||  | |||||||||| || |    
T  6728715 accgtccaagaaacgtctgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcacggcttaagtcacacata 6728616  T
Q  195 ggttataaggtgcgcaagttaagt 218  Q
    | || | ||||||||| |||||||    
T  6728615 gattgtgaggtgcgcatgttaagt 6728592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 21083864 - 21083723
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | ||||||||||| | ||||  |||||||| ||||| |||| |||| ||  |||||||||||||||||||    
T  21083864 accgtccaagaaacgtttgtgcttcagtttt-accaccggccaacttgcgcaagttaacttgcgcagaggctcagttgtaagtgacttaagtcacgcaga 21083766  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | || ||||  ||||||||| | | |||||||||||||    
T  21083765 gcttgtgagatgcgtgagttaagtctcactgcgtgacttaact 21083723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 22495861 - 22495925
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattct 126  Q
    |||||||||||||||||| ||||||||  ||| ||| | ||||||||||||||||||||| ||||    
T  22495861 aaaaacgtgtggattgaatgttgaaaaattgaccacagaccaaaaaacgtttgttcttcagttct 22495925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 18394759 - 18394851
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| |||||||| |||| ||| | |||||||| |||||||||| | |||||  ||||||||| |  ||||| ||||||||    
T  18394759 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaatgtttgttctttagttctg--caccggccaactagcgtgggttaactc 18394851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 37891814 - 37891765
Alignment:
Q  143 gcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgc 191  Q
    ||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  37891814 gcgtgagttaactcgcgctaaggctcagtggtgcgtgacttaagtcacgc 37891765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 11713248 - 11713156
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| |||||||| |||| ||| | | |||||||||||||| || | |||||  ||||||| | |  ||||||||||||||    
T  11713248 aaaaacgtgtggattgaatgttgaaaaactgaccacagactaaaaaacgtttgttttttagttctg--caccggctaactagcgtgagttaactc 11713156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 11815560 - 11815517
Alignment:
Q  198 tataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||    
T  11815560 tataacgtgcgcaagttaagacacgcagcgtgtcttaacttgcg 11815517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 29908451 - 29908487
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    |||||||||||||| |||| |||||||||||||||||    
T  29908451 tgcgcaagttaagttacgctgcgtgacttaacttgcg 29908487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 25574999 - 25574731
Alignment:
Q  19 ataaccaccataaacgtggtcnnnnnnncgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttct 118  Q
    |||||||||||||||||||||       ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25574999 ataaccaccataaacgtggtcaaaaaaacgtgtaaagtttgtagaaaacgtgtggattgaaggttgaaaacctgaccaccgtccaaaaaacgtttgttct 25574900  T
Q  119 tcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagt 218  Q
    ||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  25574899 tcagttctgaccaccgaccaacgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacacagaggttacaaggtgcacaagttaagt 25574800  T
Q  219 cacgcagcgtgacttaacttgcgtaagagcatttttgatatagctgca-ggtgcgagcaaaatgtgctg 286  Q
    ||||| || |||||||||||||| ||| |||||||||| || |||||| || |||| ||||||||||||    
T  25574799 cacgcggcatgacttaacttgcgcaagggcatttttgacatggctgcagggcgcgaccaaaatgtgctg 25574731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 48 - 268
Target Start/End: Complemental strand, 48086986 - 48086766
Alignment:
Q  48 gtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtg 147  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||| |||||||||||||||| ||||||||    
T  48086986 gtgtaaagtttgtagaaaacgtgtggattgaaggttgaaaacctgaccaccgtccaaaaaacgtttgttagtcagttctgaccaccggccaacgtgcgtg 48086887  T
Q  148 agttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagag 247  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |    
T  48086886 agttaactcgcgcataggccagtggtgcgtgacttaagtcatgcagaggttataaggtgcgcaagttaagtcacgcagtgtgacttaacttgcgcaaggg 48086787  T
Q  248 catttttgatatagctgcagg 268  Q
     |||||||| || ||||||||    
T  48086786 tatttttgacatggctgcagg 48086766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 39415490 - 39415249
Alignment:
Q  47 cgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgt 146  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||| |||||||    
T  39415490 cgtgtaaagtttgtagaaaacgtgtggattgaaggttgaaaacctgaccaccgtccaaaaaacgtttgttcttcagttctaaccatcggccaacgtgcgt 39415391  T
Q  147 gagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaaga 246  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||     
T  39415390 gagttaactcacgcacaggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaatttgtgcaagg 39415291  T
Q  247 gcatttttgatatagctgcagg-tgcgagcaaaatgtgctgg 287  Q
     ||||||||  || | ||||||  ||||||||||||| ||||    
T  39415290 ccatttttggcatggttgcaggacgcgagcaaaatgtactgg 39415249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 6755709 - 6755847
Alignment:
Q  99 gtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggtt 198  Q
    ||||||||||||| ||||||| |  ||| ||||||||||| | |||||||||||||||||||| | |||||||||| |||||||||||||| || || ||    
T  6755709 gtccaaaaaacgtgtgttcttgagctctaaccaccggccaacttgcgtgagttaactcgcgcacatgccagtggtgtgtgacttaagtcacacaaagctt 6755808  T
Q  199 ataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  6755809 ataaggtgcgtgagttaagtcacgcagcgtgacttaact 6755847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 47560329 - 47560509
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |  ||   |||||||||| |||||||||||||| ||| ||    
T  47560329 aaaaaacgtgtagattgaaggttgaaaacctgatcaccgtccaaaacacgtttgttcgtgagctcatgccaccggccaacgtgcgtgagttaaatcgtgc 47560428  T
Q  161 ataggccagtggtgc----gtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
      | | |||||||||    |||||||||||||||||||  |||||||||| |  ||||||||||||| |||||||||||||    
T  47560429 ccaagtcagtggtgcgtgagtgacttaagtcacgcagaacttataaggtgtgtgagttaagtcacgcggcgtgacttaact 47560509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 283
Target Start/End: Original strand, 2182556 - 2182668
Alignment:
Q  172 gtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatatagctgca-ggtg 270  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| | || |||||| ||||    
T  2182556 gtgcgtgacttaaatcaagcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttacgcaagggcatttttaacatggctgcatggtg 2182655  T
Q  271 cgagcaaaatgtg 283  Q
    |||||||||||||    
T  2182656 cgagcaaaatgtg 2182668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 99 - 284
Target Start/End: Original strand, 49742092 - 49742279
Alignment:
Q  99 gtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggt 197  Q
    |||||| |||||||||| ||||| ||   |||||||| || | ||||  ||||||||||||||||| | ||||||||||||||||||||||||||||| |    
T  49742092 gtccaagaaacgtttgtgcttcagtttctaccaccgggcaacttgcgcaagttaactcgcgcatagactcagtggtgcgtgacttaagtcacgcagagct 49742191  T
Q  198 tataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatatagctgca-ggtgcgagcaaaatgtgc 284  Q
    | | |||||||  ||||||||||||| ||||||||||||| ||| |||  ||||||||  || |||||| |||||||| |||||||||    
T  49742192 tgtgaggtgcgtgagttaagtcacgctgcgtgacttaactagcgcaaggacatttttggcatggctgcagggtgcgagtaaaatgtgc 49742279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 6463088 - 6462950
Alignment:
Q  99 gtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggtt 198  Q
    ||||||||||| ||||||||| |  | | ||||||||||| | ||||||||||||||| | || | ||||||||||||||||||||||||| || || ||    
T  6463088 gtccaaaaaacatttgttcttgagctttaaccaccggccaacttgcgtgagttaactcacacacatgccagtggtgcgtgacttaagtcacacaaagctt 6462989  T
Q  199 ataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||||||||  |||||||||||||| ||||||||||||    
T  6462988 ataaggtgcgtgagttaagtcacgcaacgtgacttaact 6462950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 96 - 284
Target Start/End: Complemental strand, 41650043 - 41649853
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||| ||||| ||||| || | ||||||||||| | ||||  | ||||||||||||||||| |||| |||||||||||||||||| ||||    
T  41650043 accgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaaattaactcgcgcataggctcagtagtgcgtgacttaagtcacacaga 41649944  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatatagctgca-ggtgcgagcaaaatgtgc 284  Q
    | || | ||||| |  |||||| || ||| ||||||||||| || || |||||||||||||| || |||||| || |||||||||||||||    
T  41649943 gcttgtgaggtgtgtgagttaaatctcgctgcgtgacttaatttacgcaagagcatttttgacatggctgcagggcgcgagcaaaatgtgc 41649853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 7956251 - 7956393
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||||||||||| |||||||||||| ||||| |||  || | ||| |||||||||||||||| | | |||||||| ||| ||||| ||||||| |    
T  7956251 caccgtccaaaaaacgtgtgttcttcaattttgacccccgaacaacctgcatgagttaactcgcgcacatgtcagtggtgtgtgtcttaactcacgcaca 7956350  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
       |||||||||||| |||||||||| || |||||||||||||    
T  7956351 ccatataaggtgcgctagttaagtcatgctgcgtgacttaact 7956393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 148 - 284
Target Start/End: Complemental strand, 23029692 - 23029554
Alignment:
Q  148 agttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaaga 246  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||| || |||| || ||||  ||||||||||||| ||||||||||||| ||| |||     
T  23029692 agttaactcccgcataggctcagtggtgcatgacttaagtcacgcaaagcttatgagatgcgtgagttaagtcacgctgcgtgacttaactagcgcaagg 23029593  T
Q  247 gcatttttgatatagctgca-ggtgcgagcaaaatgtgc 284  Q
    |||||||||  || |||||| || |||||||||||||||    
T  23029592 gcatttttggcatggctgcagggcgcgagcaaaatgtgc 23029554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 95 - 243
Target Start/End: Complemental strand, 14995283 - 14995134
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcatag-gccagtggtgcgtgacttaagtcacgcag 193  Q
    ||||||||||||||| | ||||||||| ||||| | || |||||  ||||||||||||||||||||| |  | |||||||| ||||||||| |||| ||     
T  14995283 caccgtccaaaaaacatgtgttcttcagttctggctactggccaatgtgcgtgagttaactcgcgcaaaatgtcagtggtgtgtgacttaactcacacaa 14995184  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgta 243  Q
    || |||||||||| |  ||||||||||||| ||||||||||||| |||||    
T  14995183 agattataaggtgtgttagttaagtcacgctgcgtgacttaactagcgta 14995134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 49501522 - 49501664
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | ||||||| ||| | ||||  ||||||||| |||||| || ||||||||||||||||||||||||||||    
T  49501522 accgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcacgcataagctcagtggtgcgtgacttaagtcacgcaga 49501621  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | |||||||  ||||||||| ||| | |||||||||||    
T  49501622 gcttgtgaggtgcgtgagttaagtctcgctgtgtgacttaact 49501664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 50561574 - 50561399
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||| |||| || | ||||||||||| |||| |||||||||||||| || | ||||| |  || |||||||| ||| |  ||||||||||||||||||    
T  50561574 aaaaaatgtgtagaatcaaggttgaaaaactgaccaccgtccaaaaaatgtgtattcttgagctcagaccaccgaccaacccgcgtgagttaactcgcgc 50561475  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | |||| |||||||| |||||||||||| || || | ||| |||| ||  ||||||||||| || ||||||||||||    
T  50561474 acaggcaagtggtgcatgacttaagtcatgctga-gctattaggtacgtgagttaagtcacacaacgtgacttaact 50561399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 2325399 - 2325491
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| |||||||| |||| ||| | ||||||||||||||||||||| |||||  ||||||||| |  ||||||||||||||    
T  2325399 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaacgtttgttcttcagttctg--caccggccaactagcgtgagttaactc 2325491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 49303310 - 49303208
Alignment:
Q  91 tgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcac 189  Q
    |||| ||||||| | |||||||||| ||||| || | ||||||||||| | |||| ||||||||||||||| |||| |||||||| ||||||||||||||    
T  49303310 tgattaccgtcctagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcgagttaactcgcgcagaggctcagtggtgtgtgacttaagtcac 49303211  T
Q  190 gca 192  Q
    |||    
T  49303210 gca 49303208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 44833715 - 44833623
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| |||||||| |||| |||   ||||||||||||||||||||| |||||  ||||||||| |  ||||||||||||||    
T  44833715 aaaaacgtgtggattgaatgttgaaaaactgaccacataccaaaaaacgtttgttcttcagttctg--caccggccaactagcgtgagttaactc 44833623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 8628560 - 8628438
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    ||||||||||| ||||||| |||||||| |||| ||  | | ||||| | ||||||||||| |||||| ||||||||| | |||||||||||||| || |    
T  8628560 aaaaaacgtgtagattgaatgttgaaaaactgaccaaagactaaaaatcctttgttcttcagttctgatcaccggcca-cctgcgtgagttaacttgccc 8628462  T
Q  161 ataggccagtggtgcgtgacttaa 184  Q
    |    |||||||||||||||||||    
T  8628461 accaaccagtggtgcgtgacttaa 8628438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 42947655 - 42947563
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    ||||| |||||||||||| |||||||| |||| |||   ||||||||||||||||||||| |||||  ||||||||| |  ||||||||||||||    
T  42947655 aaaaatgtgtggattgaatgttgaaaaactgaccacataccaaaaaacgtttgttcttcagttctg--caccggccaactagcgtgagttaactc 42947563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 53824582 - 53824490
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| |||||||| |||| |||   ||||||||||||||||||||| |||||  ||||||||| |  ||| ||||||||||    
T  53824582 aaaaacgtgtggattgaatgttgaaaaactgaccacaaaccaaaaaacgtttgttcttcagttctg--caccggccaactggcgcgagttaactc 53824490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 25745132 - 25745265
Alignment:
Q  99 gtccaaaaaacgtttgttcttcaattctgaccac-cggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggt 197  Q
    ||||||||| ||| ||||||| |  ||||||||  |||||| | |||||||||||||||| |||  |||||  || ||||||||||||||||||||| |     
T  25745132 gtccaaaaaccgtgtgttcttgagctctgaccaatcggccaacctgcgtgagttaactcgtgcagcggccaaaggagcgtgacttaagtcacgcaga-gc 25745230  T
Q  198 tataaggtgcgcaagttaagtcacgcagcgtgact 232  Q
    ||||||||| |  |||||||||| || ||||||||    
T  25745231 tataaggtgtgtgagttaagtcatgctgcgtgact 25745265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 35485535 - 35485478
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttctt 119  Q
    |||||||||||||||||| |||||||| ||||| || | |||||||||||||||||||    
T  35485535 aaaaacgtgtggattgaatgttgaaaaactgatgacagaccaaaaaacgtttgttctt 35485478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 16967767 - 16967859
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| |||||||| |||| |||   | ||||||||||||||||||| |||||  ||||||||| |  ||| ||||||||||    
T  16967767 aaaaacgtgtggattgaatgttgaaaaactgaccacaaacaaaaaaacgtttgttcttcagttctg--caccggccaactggcgcgagttaactc 16967859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 2447691 - 2447597
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcac 189  Q
    ||||||||| |||||||||| ||||| || | ||||| ||||| | ||||  |||||||||||||||||||  |||| |||||||||||| ||||    
T  2447691 accgtccaagaaacgtttgtgcttcagtttttaccactggccaacttgcgccagttaactcgcgcataggcttagtgttgcgtgacttaactcac 2447597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 37282182 - 37282224
Alignment:
Q  167 cagtggtgcgtgacttaagtcacgcagaggttataaggtgcgc 209  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  37282182 cagtggtgcgtgacttaagtcacgcaaagcttataaggtgcgc 37282224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 32211255 - 32211122
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgacca-ccggccagcgtgcgtgagttaactcgcg 159  Q
    ||||||| ||| ||||||| |||||||| |||| ||  ||||||||||| | |||| || |  |||| ||| ||||||| | ||| |||||||||| |||    
T  32211255 aaaaaacatgtagattgaatgttgaaaagctgaccaaagtccaaaaaacatgtgtttttgagctctggccaaccggccaccatgcatgagttaactagcg 32211156  T
Q  160 cataggccagtggtgcgtgacttaagtcacgcag 193  Q
    ||  ||||| ||| || |||||||||||||||||    
T  32211155 caccggccactggagcatgacttaagtcacgcag 32211122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 53401547 - 53401606
Alignment:
Q  178 gacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |||||||||||||||||| |||| |||||||  ||||||||| ||| |||| ||||||||    
T  53401547 gacttaagtcacgcagagcttatgaggtgcgtgagttaagtctcgctgcgtaacttaact 53401606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 33448691 - 33448598
Alignment:
Q  143 gcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaac 236  Q
    ||||||||||||||||||  |||| || ||||||||||||||||||||| ||| | ||||| ||| |  |||||||| |||| || |||||||||    
T  33448691 gcgtgagttaactcgcgcgaaggctcaatggtgcgtgacttaagtcacgtaga-gctataacgtgtgtgagttaagttacgctgcttgacttaac 33448598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 29523212 - 29523249
Alignment:
Q  204 gtgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    |||||||||||||| || ||||||||||||||||||||    
T  29523212 gtgcgcaagttaagacatgcagcgtgacttaacttgcg 29523249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 2182627 - 2182591
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    |||| |||||||||||||| |||||||||||||||||    
T  2182627 tgcgtaagttaagtcacgctgcgtgacttaacttgcg 2182591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 23029596 - 23029628
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||| |||||||||||||||||||||||||||    
T  23029596 tgcgctagttaagtcacgcagcgtgacttaact 23029628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 48086791 - 48086827
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||||||||||||| | |||||||||||||||||    
T  48086791 tgcgcaagttaagtcacactgcgtgacttaacttgcg 48086827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 49742237 - 49742205
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||| |||||||||||||||||||||||||||    
T  49742237 tgcgctagttaagtcacgcagcgtgacttaact 49742205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 41871905 - 41871638
Alignment:
Q  19 ataaccaccataaacgtggtcnnnnnnncgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttct 118  Q
    |||||||||||||| ||||||       | ||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41871905 ataaccaccataaatgtggtcaaaaaaacatgtaaagtttgtagaaaacgtgtggattgaaggttgaaaacctgaccaccgtccaaaaaacgtttgttct 41871806  T
Q  119 tcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagt 218  Q
    ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  41871805 tcagttcttaccaccggccaacgtgcgtgagttaactcgcgcataggccagtggtgcgttacttaagtcacacagaggttataaggtgcgcaagttaagt 41871706  T
Q  219 cacgcagcgtgacttaacttgcgtaagagcatttttgatatagctgca-ggtgcgagcaaaatgtgct 285  Q
    || |||||||||||||||||||| ||| |||||||||  || |||| | || ||||||||||||||||    
T  41871705 catgcagcgtgacttaacttgcgcaagggcatttttggcatggctgtagggcgcgagcaaaatgtgct 41871638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 48566930 - 48566695
Alignment:
Q  19 ataaccaccataaacgtggtcnnnnnnncgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttct 118  Q
    |||||||||||||| ||||||       | ||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48566930 ataaccaccataaatgtggtcaaaaaaacatgtaaagtttgtagaaaacatgtggattgaaggttgaaaacctgaccaccgtccaaaaaacgtttgttct 48566831  T
Q  119 tcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagt 218  Q
    ||| ||||||||||| |||| |||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||  |||||||||||    
T  48566830 tcagttctgaccaccagccaacgtgcgtgagttaactcgcgcataggccagtaatgcgtgacttaagtcacgcaaaggttataaggtctgcaagttaagt 48566731  T
Q  219 cacgcagcgtgacttaacttgcgtaagagcattttt 254  Q
    |||||| ||||||||||||| || |||| |||||||    
T  48566730 cacgcaacgtgacttaacttacgcaagaacattttt 48566695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 49597336 - 49597173
Alignment:
Q  48 gtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtg 147  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||||| ||| ||||||||    
T  49597336 gtgtaaagtttgtagaaaacgtgtggattgaaggttgaaaacctgaccaccgtccaaaaatcgtttgttctttagttctgaccaccgaccaacgtgcgtg 49597237  T
Q  148 agttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||    
T  49597236 agttaactcgcgcataggccagtggtgcgtgacttaagtcacgctgaagttataagatgcgcaa 49597173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 59 - 284
Target Start/End: Complemental strand, 39222835 - 39222609
Alignment:
Q  59 gtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgc 158  Q
    |||||||||||||||| |||| |||| ||| |||||||  | |||||||||||||||||||||  ||||||||||| |||  |||||||||||||||||     
T  39222835 gtaaaaaacgtgtggaatgaatgttggaaaactgatcaaggaccaaaaaacgtttgttcttcagctctgaccaccgaccatggtgcgtgagttaactcgt 39222736  T
Q  159 gcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgata 258  Q
    |||||||||| ||||||||||||||||||||||| || |||||||| |||| ||||||||||||| ||||||||||||| ||| |||  ||||||||  |    
T  39222735 gcataggccattggtgcgtgacttaagtcacgcatagattataaggcgcgctagttaagtcacgctgcgtgacttaactagcgcaaggacatttttggca 39222636  T
Q  259 tagctgca-ggtgcgagcaaaatgtgc 284  Q
    | |||||| || |||||||||||||||    
T  39222635 tggctgcagggcgcgagcaaaatgtgc 39222609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 61 - 284
Target Start/End: Complemental strand, 46923908 - 46923684
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||| ||||||| |||| |||| ||| |||||||  | |||||||| ||||||||||||  |||||||||||| ||  ||||||||||||||||||||    
T  46923908 aaaaaatgtgtggaatgaatgttggaaaactgatcaaggaccaaaaaatgtttgttcttcatctctgaccaccggacatggtgcgtgagttaactcgcgc 46923809  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatata 260  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||  ||||||| ||||| ||| ||| |||||||||  ||     
T  46923808 ataggccattggtgcgtgacttaagtcacgcatagattataaggtgcgctagttaagtcacgttgcgtgacgtaactagcgcaagggcatttttggcatg 46923709  T
Q  261 gctgca-ggtgcgagcaaaatgtgc 284  Q
    |||||| || |||||||||||||||    
T  46923708 gctgcagggcgcgagcaaaatgtgc 46923684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 3660133 - 3660309
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||||||||||| |||| |||||||| | || ||  | | |||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  3660133 aaaaaacgtgtggaatgaatgttgaaaaaccgaccaaagacaaaaaaacgtttgttcttcagctctgaccaccggccaaggtgcgtgagttaactcgcgc 3660232  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | | |||||||||    
T  3660233 ataggccaatggtgcgtgacttaagtcacgcagagcttataaggtgcgctagttaagtcacgctgtgcgacttaact 3660309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 59 - 235
Target Start/End: Complemental strand, 21483038 - 21482862
Alignment:
Q  59 gtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgc 158  Q
    |||||||||||||||| |||| |||||||| |||| ||  | | |||||| ||||||||||||  |||||||| |||||| ||||||||||||||||||     
T  21483038 gtaaaaaacgtgtggaatgaatgttgaaaaactgaccaaagactaaaaaaagtttgttcttcagctctgaccatcggccaacgtgcgtgagttaactcgt 21482939  T
Q  159 gcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaa 235  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||| |  ||||||||||||| |||||||||||    
T  21482938 gcataggctagtggtgcgtgacttaagtcacgcagagcttataaggtgtgttagttaagtcacgctgcgtgacttaa 21482862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 46178785 - 46178669
Alignment:
Q  47 cgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgt 146  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| || | |||||    
T  46178785 cgtgtaaagtttgtagaaaaagtgtggattgaaggttgaaaacctgaccaccggccaaaaaacgtttgttcttcagttctgaccaccggtcaacatgcgt 46178686  T
Q  147 gagttaactcgcgcata 163  Q
    |||||||||||||||||    
T  46178685 gagttaactcgcgcata 46178669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 95 - 235
Target Start/End: Complemental strand, 47983778 - 47983638
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||||||||||| ||||||| | |||||||||||||||| ||||||| |||||||||||||| | |||||||||  ||||||||| |||||||||    
T  47983778 caccgtccaaaaaacgtgtgttctttagttctgaccaccggccaacgtgcgtcagttaactcgcgcacatgccagtggtaagtgacttaactcacgcaga 47983679  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaa 235  Q
       |||||||||||  ||||||||||||| |||||||||||    
T  47983678 acatataaggtgcgttagttaagtcacgctgcgtgacttaa 47983638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 5770556 - 5770694
Alignment:
Q  99 gtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggtt 198  Q
    ||||| ||||||| |||| || |  ||| ||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||| |||||| || ||    
T  5770556 gtccataaaacgtgtgtttttgagctctaaccaccggccaccttgcgtgagttagctcgcgcacaggccagtggtgcgtgacttaagccacgcaaagctt 5770655  T
Q  199 ataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  5770656 ataaggtgcgtgagttaagtcacgcagcgtgacttaact 5770694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 11012281 - 11012135
Alignment:
Q  47 cgtgtaaaggttgtaaaa-aacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcg 145  Q
    |||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| | |  ||  ||||||||||| ||||||    
T  11012281 cgtgtaaaggttgtaaaagaacgtgtggattgaaagttgaaaacttgaccaccgtccaaaaaacgtttgttcatgagctcataccaccggccaacgtgcg 11012182  T
Q  146 tgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgca 192  Q
    ||||||||||| |||  |||||||||||| | ||||||| |||||||    
T  11012181 tgagttaactcacgcccaggccagtggtgtgcgacttaactcacgca 11012135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 18843968 - 18844110
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||| ||||||||| ||||||||| |||||| ||||||||| |||||||||||||||| ||||| |  ||||||||| |||||||||||||||||||    
T  18843968 caccgtctaaaaaacgtgtgttcttcagttctgatcaccggccaacgtgcgtgagttaacttgcgcacataccagtggtgtgtgacttaagtcacgcaga 18844067  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
       ||||| ||| |  |||||||||| || |||| ||||||||    
T  18844068 acatataaagtgtgttagttaagtcaggcggcgtaacttaact 18844110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 5766817 - 5766955
Alignment:
Q  99 gtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggtt 198  Q
    |||||||||| || |||| || |  ||| |||||||| || | || ||||||||||||||||| ||||||||||||||||||||||| |||||| || ||    
T  5766817 gtccaaaaaaagtgtgtttttaagctctaaccaccggtcaccttgtgtgagttaactcgcgcacaggccagtggtgcgtgacttaagccacgcaaagctt 5766916  T
Q  199 ataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |||||||| |  ||||||| || ||||||||||||||||    
T  5766917 ataaggtgtgtgagttaagccatgcagcgtgacttaact 5766955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 33686534 - 33686676
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||| ||||| ||||| || | ||||||||||| | | ||  ||||||||||||||||||| |||||||||||||||||||||||||| |    
T  33686534 accgtccaagaaacatttgtgcttcagtttttaccaccggccaacttacgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcaaa 33686633  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | |||||||  ||||||||| ||| |||||||||||||    
T  33686634 gcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaact 33686676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 1671316 - 1671458
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcag 193  Q
    |||||||||||| |||||||||||||| || ||||||||| ||| | |||||| ||||||||||||| |||| ||||||| |||||||||||||  |||     
T  1671316 caccgtccaaaa-acgtttgttcttcagttttgaccaccgaccaacttgcgtgcgttaactcgcgcagaggctcagtggttcgtgacttaagtcctgcaa 1671414  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |  || |||||||||  | ||||||||||| |||||||||||||    
T  1671415 aacttgtaaggtgcgtgaattaagtcacgctgcgtgacttaact 1671458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 7014764 - 7014906
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggcc-agtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | ||||||||||| | ||||  |||||||||||||||| ||  ||||||||||||||||||||||| |||    
T  7014764 accgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcatatgcttagtggtgcgtgacttaagtcacgtaga 7014863  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | |||||||  ||||||||| ||| | |||||||||||    
T  7014864 gcttgtgaggtgcgtgagttaagtctcgctgtgtgacttaact 7014906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 20447255 - 20447122
Alignment:
Q  103 aaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttata 201  Q
    |||||| |||||||||||| |||||||||||| ||| |  ||||||||||||||||||  |||| ||| ||||||| |||||||||||||| | | ||||    
T  20447255 aaaaaaagtttgttcttcagttctgaccaccgaccaactagcgtgagttaactcgcgcgaaggctcaggggtgcgtaacttaagtcacgca-aagctata 20447157  T
Q  202 aggtgcgcaagttaagtcacgcagcgtgacttaac 236  Q
    | ||| |  ||||||||||||||||||||||||||    
T  20447156 acgtgtgtgagttaagtcacgcagcgtgacttaac 20447122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 20533018 - 20532885
Alignment:
Q  103 aaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttata 201  Q
    |||||| |||||||||||| |||||||||||| ||| |  ||||||||||||||||||  |||| ||| ||||||| |||||||||||||| | | ||||    
T  20533018 aaaaaaagtttgttcttcagttctgaccaccgaccaactagcgtgagttaactcgcgcgaaggctcaggggtgcgtaacttaagtcacgca-aagctata 20532920  T
Q  202 aggtgcgcaagttaagtcacgcagcgtgacttaac 236  Q
    | ||| |  ||||||||||||||||||||||||||    
T  20532919 acgtgtgtgagttaagtcacgcagcgtgacttaac 20532885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 30858591 - 30858451
Alignment:
Q  98 cgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagagg 196  Q
    |||| |||||||||||||||||||  | ||||||||||||| | |||| ||||||||||||| | |||| || ||||   ||||||||||||| |||||     
T  30858591 cgtctaaaaaacgtttgttcttcagctttgaccaccggccaacttgcgcgagttaactcgcgtagaggctcaatggtttatgacttaagtcacacagagc 30858492  T
Q  197 ttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || |||||||||  ||||||||||||| || ||||||||||    
T  30858491 ttgtaaggtgcgtgagttaagtcacgctgcatgacttaact 30858451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 50065753 - 50065661
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| |||||||| |||| ||| | ||||||||||||||||||||| |||||  ||||||||| | |||||||||||||||    
T  50065753 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaacgtttgttcttcagttctg--caccggccaacctgcgtgagttaactc 50065661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 23602898 - 23603090
Alignment:
Q  48 gtgtaaaggttgtaaaaaa-cgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccacc-ggccagcgtgcg 145  Q
    ||||||| ||||||||||| ||||| ||||||| ||||||||  ||| ||    ||||||||||| ||||||| |  |||||| | | ||||| | ||||    
T  23602898 gtgtaaaagttgtaaaaaaacgtgtagattgaaagttgaaaagatgaccaaataccaaaaaacgtgtgttcttgagctctgactaactggccaacctgcg 23602997  T
Q  146 tgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggt-tataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
     ||||||||||||||| | || ||| |||||||||||||||||||| ||| | ||| || ||| | |||||||||||||| ||||||||||||    
T  23602998 cgagttaactcgcgcacaagctagttgtgcgtgacttaagtcacgctgagatatattagatgcacgagttaagtcacgcaacgtgacttaact 23603090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 10308537 - 10308428
Alignment:
Q  128 accaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcg 227  Q
    ||||||||||| | ||||  ||||||||| |||| | ||||||||||||||||||||||||| || || || | |||||||  ||||||||| ||| |||    
T  10308537 accaccggccaacttgcgcaagttaactcacgcacatgccagtggtgcgtgacttaagtcacacaaagcttgtgaggtgcgtgagttaagtctcgctgcg 10308438  T
Q  228 tgacttaact 237  Q
    ||||||||||    
T  10308437 tgacttaact 10308428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 9343627 - 9343499
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||||||||  |||||||||||||||||||| ||||||||||||||||| || |||| |  || || ||||||  | | |||||||||||||||| ||    
T  9343627 aaaaaacgtgtaaattgaaggttgaaaacctgaccaccgtccaaaaaacgtgtgctcttgagctcggatcaccggttaacctgcgtgagttaactcgtgc 9343528  T
Q  161 ataggccagtggtgcgtgacttaagtcac 189  Q
      | |||||| |||| |||||||| ||||    
T  9343527 ccatgccagtagtgcatgacttaactcac 9343499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 12926921 - 12926782
Alignment:
Q  99 gtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggt 197  Q
    |||||| |||||||||| ||||| || | ||||   |||| | ||||  ||||||||||||||||||| ||||||||| ||||||||||| ||||||| |    
T  12926921 gtccaagaaacgtttgtgcttcagtttttaccattagccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcgcgcagagct 12926822  T
Q  198 tataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | | ||||||   ||||||||| ||| |||||||||||||    
T  12926821 tgtgaggtgcatgagttaagtctcgctgcgtgacttaact 12926782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 22605536 - 22605393
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcag 193  Q
    ||||||||||||||||| | ||||||| || | ||||||||| | | ||||  |||||||||| | | |||| || ||||||||||||||||||||| ||    
T  22605536 caccgtccaaaaaacgtatattcttcagtttttaccaccggctaacttgcgcaagttaactcgtgtagaggctcaatggtgcgtgacttaagtcacgtag 22605437  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || || | |||||||  | ||||||||||| ||| |||||||||    
T  22605436 agcttgtgaggtgcgtgacttaagtcacgctgcgcgacttaact 22605393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 26013639 - 26013762
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    ||||||| ||||||||||| |||||| | | || ||  ||| |||||| |||||||||||| |||||||||||||  | ||| || |||||||| |||||    
T  26013639 aaaaaacatgtggattgaatgttgaataaccgaccaaagtctaaaaaatgtttgttcttcagttctgaccaccgggtaacgtacgcgagttaacccgcgc 26013738  T
Q  161 ataggccagtggtgcgtgacttaa 184  Q
    | ||  ||||||||||||||||||    
T  26013739 acagatcagtggtgcgtgacttaa 26013762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 43138639 - 43138739
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | | |||||||||   ||||  ||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  43138639 accgtccaagaaacgtttgtgcttcagtttttatcaccggccaatttgcgcaagttaactcgcgcataggctcagtggtgcgcgacttaaatcacgcaga 43138738  T
Q  195 g 195  Q
    |    
T  43138739 g 43138739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 39650488 - 39650396
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    ||||| |||||||||||| |||||||| |||| ||| | ||||||||||||||||||||| |||||  ||||||||| |  || |||||||||||    
T  39650488 aaaaatgtgtggattgaatgttgaaaaactgaccacagaccaaaaaacgtttgttcttcagttctg--caccggccaactagcatgagttaactc 39650396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 284
Target Start/End: Complemental strand, 30308404 - 30308285
Alignment:
Q  164 ggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatatagct 263  Q
    ||||| ||||||||||||||||||||  | | |||||||||||| |  |||||||||||| |||||||||||||  || || | ||||||||  || |||    
T  30308404 ggccattggtgcgtgacttaagtcac--ataagttataaggtgcactggttaagtcacgctgcgtgacttaactaacgcaaaaacatttttggcatggct 30308307  T
Q  264 gca-ggtgcgagcaaaatgtgc 284  Q
    ||| || |||||||||||||||    
T  30308306 gcagggcgcgagcaaaatgtgc 30308285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 15399166 - 15399068
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcag 193  Q
    ||||||| | |||||||||| |||||||| | ||||||  ||| | ||||| |||||||||||||| || | | |||||||||||||||| ||||||||    
T  15399166 accgtcccataaacgtttgtgcttcaatttttaccaccatccaacttgcgtaagttaactcgcgcagagactcggtggtgcgtgacttaactcacgcag 15399068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 47485679 - 47485614
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctg 127  Q
    |||||||||||||||||| |||||||| |||| |||   |||||||||| |||||||||| |||||    
T  47485679 aaaaacgtgtggattgaatgttgaaaaactgaccacataccaaaaaacggttgttcttcagttctg 47485614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 3752958 - 3752866
Alignment:
Q  145 gtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||||||| |||| || |||||||||||| ||||||||||   ||||   |||||||||||||| || |||||||||   ||||||||||||    
T  3752958 gtgagttaattcgcacacaggccagtggtgtgtgacttaaggtgcgcatgtgttataaggtgcgctagctaagtcacgttacgtgacttaact 3752866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 30308479 - 30308400
Alignment:
Q  59 gtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggcca 138  Q
    |||||||| ||||||| |||| |||| ||| |||||||  | ||||||||| |||||||||||  ||| |||||||||||    
T  30308479 gtaaaaaatgtgtggaatgaatgttggaaaactgatcaaagaccaaaaaacatttgttcttcagctcttaccaccggcca 30308400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 39222651 - 39222683
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||| |||||||||||||||||||||||||||    
T  39222651 tgcgctagttaagtcacgcagcgtgacttaact 39222683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 41871681 - 41871717
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||||||||||||||| || ||||||||||||||    
T  41871681 tgcgcaagttaagtcacgctgcatgacttaacttgcg 41871717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 53)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 38131611 - 38131342
Alignment:
Q  19 ataaccaccataaacgtggtcnnnnnnncgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttct 118  Q
    |||||||||||||| ||||||       ||||||||| ||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||    
T  38131611 ataaccaccataaatgtggtcaaaaaaacgtgtaaagtttgtagaaaacgtgtgggttgaaggtcgaaaacctgaccaccgtccaaaaaacgtttgttct 38131512  T
Q  119 tcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagt 218  Q
    ||| || ||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  38131511 tcagttgtgaccaccggctaacgtgcgtgagttaactcgtgcataggcccgtggtgcgtgacttaagtcacacagaggttagaaggtgcgcaagttaagt 38131412  T
Q  219 cacgcagcgtgacttaacttgcgtaagagcatttttgatatagctgca-ggtgcgagcaaaatgtgctgg 287  Q
    || |||||||||||||||||||| ||| |||||||||  || |||||| || ||||||||||||||||||    
T  38131411 catgcagcgtgacttaacttgcgcaagggcatttttggcatggctgcagggcgcgagcaaaatgtgctgg 38131342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 61 - 284
Target Start/End: Original strand, 49065506 - 49065731
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaa-aacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcg 159  Q
    |||||||||||||| |||| |||| ||| || ||||  | |||||| |||||||||||||||  |||||||||||||||  |||||||||||||||||||    
T  49065506 aaaaaacgtgtggaatgaatgttggaaaactaatcaaggaccaaaaaaacgtttgttcttcagctctgaccaccggccaaggtgcgtgagttaactcgcg 49065605  T
Q  160 cataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatat 259  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |||||||||||| ||| ||| |||||||||  ||    
T  49065606 cataggccagtggtgcgtgacttaagtcacgcatagtttataaggtgcgctagttaagtcacgcaacgtgacttaactagcgcaagggcatttttggcat 49065705  T
Q  260 agctgca-ggtgcgagcaaaatgtgc 284  Q
     |||||| || |||||||||||||||    
T  49065706 ggctgcagggcgcgagcaaaatgtgc 49065731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 47 - 266
Target Start/End: Original strand, 27761058 - 27761291
Alignment:
Q  47 cgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaa--------------aaacgtttgttcttcaattctgaccac 132  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||| || ||||||||              |||||||||||||| | ||||||| ||    
T  27761058 cgtgtaaagtttgtagaaaacgtgtggattgaaggttgaaaatctgaccatcgtccaaaaaacgtttgtcaaaaaacgtttgttcttgagttctgactac 27761157  T
Q  133 cggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgact 232  Q
    |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||    
T  27761158 cggccaacgtgtgtgagttaactcgcgcataggctagtggtgcgtgacttaagtcacgcagagattataaggtgcgcaaattaaatcacgcagcgtgact 27761257  T
Q  233 taacttgcgtaagagcatttttgatatagctgca 266  Q
    ||||||||| ||| |||||||||| || ||||||    
T  27761258 taacttgcgcaagggcatttttgacatggctgca 27761291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 61 - 284
Target Start/End: Original strand, 21713121 - 21713345
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||||||||||| |||| |||| ||| |||||||  | |||||||||||||||||||||  |||||||||||||||   |||||||||||||||| ||    
T  21713121 aaaaaacgtgtggaatgaatgttggaaaactgatcaaggaccaaaaaacgtttgttcttcagctctgaccaccggccatgttgcgtgagttaactcgtgc 21713220  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatata 260  Q
    |||||||| |||||||||||||||| |||||| || ||||||||||||| |||||| |||||| ||||||||||||| ||| ||| |||||||||  ||     
T  21713221 ataggccattggtgcgtgacttaagccacgcatagattataaggtgcgctagttaaatcacgctgcgtgacttaactagcgcaagggcatttttggcatg 21713320  T
Q  261 gctgca-ggtgcgagcaaaatgtgc 284  Q
    |||||| || |||||||||||||||    
T  21713321 gctgcagggcgcgagcaaaatgtgc 21713345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 42039145 - 42038969
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||    
T  42039145 aaaaaacgtgtggattgaagattgaaaacctgaacaccgtccaaaaaacgtctgttcttcagttctgaccaccggccaacgtgcgtgagttaactcgcgc 42039046  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | |||||||||||||||||| ||||   |||||  ||||||||||| ||  |||| ||||||| |||||||||||||    
T  42039045 acaggccagtggtgcgtgacataaggtgcgcagttgttataaggtgtgctggttaggtcacgctgcgtgacttaact 42038969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 31823182 - 31823039
Alignment:
Q  19 ataaccaccataaacgtggtcnnnnnnncgtgtaaaggttgtaaaaaacgtgtggattgaa-ggttgaaaacctgatcaccgtccaaaaaacgtttgttc 117  Q
    |||||||||||||| ||||||       ||||||||  ||||  ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  31823182 ataaccaccataaatgtggtcaaaaaaacgtgtaaaatttgttgaaaacgtgtggattgaaaggttgaaaacctgaccaccgtccaaaaaacgtttgttc 31823083  T
Q  118 ttcaattctgaccaccggccagcgtgcgtgagttaactcgcgca 161  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||    
T  31823082 ttcagttctgaccaccggccaacgtgcgtgagttaactcacgca 31823039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 32935815 - 32935683
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    ||||||||||| ||||||| |||||||| |||| ||  | |||||||||||||||||||||  |||| |||||||||| |||||||||||||||||||||    
T  32935815 aaaaaacgtgtagattgaatgttgaaaaactgaccaaagaccaaaaaacgtttgttcttcagctctggccaccggccaacgtgcgtgagttaactcgcgc 32935716  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcag 193  Q
    |||||| ||||||||||||||||| | ||||||    
T  32935715 ataggcaagtggtgcgtgacttaactaacgcag 32935683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 9242917 - 9243051
Alignment:
Q  103 aaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttata 201  Q
    ||||||||||||||||||| ||||||| |||||||| | |||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||    
T  9242917 aaaaaacgtttgttcttcagttctgactaccggccaacttgcgtgagttaactcgcgga-aggctcagtggtgcgtgacttaagtcacgcagagattata 9243015  T
Q  202 aggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||| |  |||||||||||| || |||||||||||    
T  9243016 aggtgtgtgagttaagtcacgtagtgtgacttaact 9243051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 2778106 - 2777929
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtcca-aaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcg 159  Q
    |||||||| || ||||||||||||||||  | | |||| |||| ||||||||||||| || |   | |||||||||||| | ||||||||||||||||||    
T  2778106 aaaaaacgcgtagattgaaggttgaaaaggttaccaccatccacaaaaacgtttgttattgaggacagaccaccggccaacttgcgtgagttaactcgcg 2778007  T
Q  160 cataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || |||||||||| | ||||||||||| |||||||  ||||||||||||  ||||||||||||| |||||||||||||    
T  2778006 cacaggccagtggcgtgtgacttaagttacgcagaacttataaggtgcgtgagttaagtcacgctgcgtgacttaact 2777929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 59 - 184
Target Start/End: Complemental strand, 372828 - 372703
Alignment:
Q  59 gtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgc 158  Q
    ||||||||||||| || | |||||||||||||||||||||||||||||||||| ||||||| |  || |||||||||||| | ||||||  ||||||| |    
T  372828 gtaaaaaacgtgtagaatcaaggttgaaaacctgatcaccgtccaaaaaacgtgtgttcttgagctcagaccaccggccaacctgcgtggattaactcac 372729  T
Q  159 gcataggccagtggtgcgtgacttaa 184  Q
    ||| | ||||||||||||||||||||    
T  372728 gcacatgccagtggtgcgtgacttaa 372703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 13856018 - 13856193
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||||||||  | | ||||||||||| |||| |||| |||||||||| | ||||||| |  || |||||||||||| | |||||||||||||| | ||    
T  13856018 aaaaaacgtgtaaaatcaaggttgaaaagctgaccaccatccaaaaaacctgtgttcttgagctcagaccaccggccaacctgcgtgagttaacttgtgc 13856117  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || |||||||| ||||||||||||||||||| || | ||| |||||    |||||||||||||||||||||||||||    
T  13856118 atcggccagtgatgcgtgacttaagtcacgctga-gctattaggtggatgagttaagtcacgcagcgtgacttaact 13856193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 42119072 - 42118929
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcag 193  Q
    |||||||| |||||||||||| ||||| || | ||||||||||| | ||||  |||||||||||| | |||| |||||||||||||||||||||||||||    
T  42119072 caccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggctcagtggtgcgtgacttaagtcacgcag 42118973  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |  || | ||||| |  |||||||||||||||||||||||||||    
T  42118972 aacttgtgaggtgtgtgagttaagtcacgcagcgtgacttaact 42118929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 43502275 - 43502417
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | ||||||||||| | ||||  ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  43502275 accgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcgcgacttaagtcacgcaga 43502374  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | ||||||||| ||||| || ||| |||| ||||||||    
T  43502375 gcttgtgaggtgcgcatgttaaatctcgctgcgttacttaact 43502417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 1227891 - 1228023
Alignment:
Q  58 tgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcg 157  Q
    |||||||||||||||||||||  |||||||| |||| ||| | ||||||||||||||||||||| |||||||||||||||| |  | |||||||||||||    
T  1227891 tgtaaaaaacgtgtggattgagtgttgaaaaactgaccacagaccaaaaaacgtttgttcttcagttctgaccaccggccaactagtgtgagttaactcg 1227990  T
Q  158 cgcataggc-cagtggtgcgtgacttaagtcac 189  Q
     ||  |||| || ||||| ||||||||||||||    
T  1227991 tgctaaggctcaatggtgggtgacttaagtcac 1228023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 31936280 - 31936454
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    ||||||||||| |||| ||||||||||||||||  | ||| |||||||||| |||| || |  || ||||| |||||| | |||||||||||||||||||    
T  31936280 aaaaaacgtgtagatt-aaggttgaaaacctgactatcgttcaaaaaacgtgtgtttttgagctcagaccatcggccaacctgcgtgagttaactcgcgc 31936378  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
      ||||||||||||||||||||||||||| || | |  ||||||||||  |||||||||| |  |||||||||||||    
T  31936379 ccaggccagtggtgcgtgacttaagtcacaca-aagcaataaggtgcgtgagttaagtcaagtcgcgtgacttaact 31936454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 54703734 - 54703592
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggcc-agtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||||||||| || | ||||||| ||| | ||||  ||||||||||| |||||||| ||||||||| |||||||||||||||||    
T  54703734 accgtccaagaaacgtttgttcttcagtttttaccaccgaccaacttgcgcaagttaactcgcacataggcccagtggtgcgcgacttaagtcacgcaga 54703635  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | ||||||| | |||||||| ||| |||| ||||||||    
T  54703634 gcttgtgaggtgcgtatgttaagtctcgctgcgttacttaact 54703592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 14289800 - 14289664
Alignment:
Q  101 ccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttat 200  Q
    |||||||| ||||||| ||||  ||||||||||| |||  || | |||||||||||||||||||  |||||||| |||||||||||||| || |  ||||    
T  14289800 ccaaaaaatgtttgtttttcagctctgaccaccgaccaaggtacatgagttaactcgcgcatagatcagtggtgtgtgacttaagtcacacatatattat 14289701  T
Q  201 aaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||||||| ||||||||||| | | |||||||||||    
T  14289700 aaggtgcgctagttaagtcacactgtgtgacttaact 14289664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 24608148 - 24608286
Alignment:
Q  99 gtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggtt 198  Q
    ||||||||| ||| |||| || |  ||| ||||||||||| | |||||||||||||||||||| |  |||||| |||||||||||| |||| || || ||    
T  24608148 gtccaaaaagcgtgtgtttttgagctctaaccaccggccaacttgcgtgagttaactcgcgcacataccagtgatgcgtgacttaactcacacaaagatt 24608247  T
Q  199 ataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||||||||| ||||||||| ||| |||| ||||||||    
T  24608248 ataaggtgcgctagttaagtctcgctgcgtaacttaact 24608286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 52789492 - 52789350
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | ||||||| ||| | ||||  ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52789492 accgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcaga 52789393  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | |||||||   ||||||| ||||  | ||||||||||    
T  52789392 gtttgtgaggtgcgtgtgttaagtgacgctacttgacttaact 52789350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 31823059 - 31822963
Alignment:
Q  172 gtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatatagctgcagg 268  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||  || ||||||||    
T  31823059 gtgcgtgagttaactcacgcaaagcttataaggtgcgcaagttaagtcacacagcgtggcttaacttgcgcaagggcatttttggcatggctgcagg 31822963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 37694504 - 37694644
Alignment:
Q  98 cgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagagg 196  Q
    ||||| |||||||| ||| ||||| || | ||||||||||| | ||||   ||||||||||| | |||| |||||||||||||||||||||| ||||||     
T  37694504 cgtcccaaaaacgtctgtgcttcagtttttaccaccggccaacttgcgcaggttaactcgcgtagaggctcagtggtgcgtgacttaagtcatgcagagc 37694603  T
Q  197 ttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || | |||||||  ||||||||||||| |||||||||||||    
T  37694604 ttgtgaggtgcgtgagttaagtcacgctgcgtgacttaact 37694644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 49261739 - 49261918
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattct--gaccaccggccagcgtgcgtgagttaactcgc 158  Q
    |||||||||||  | | ||| |||||||||||| ||||||||||||||||| ||||||| |   ||  ||||| |||||| | |||||| ||||||| ||    
T  49261739 aaaaaacgtgtaaaatcaagattgaaaacctgaccaccgtccaaaaaacgtgtgttcttgagagctcagaccatcggccaacctgcgtgggttaacttgc 49261838  T
Q  159 gcataggccagtggtgcgtgacttaagtcacgcagaggt-tataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||| | | ||||||||||||||||||||||||| ||  | ||| |||||||  |||||||||| || |||||||||||||    
T  49261839 gcacatgtcagtggtgcgtgacttaagtcacgctgaactctattaggtgcgtgagttaagtcatgctgcgtgacttaact 49261918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 61 - 233
Target Start/End: Original strand, 13867740 - 13867910
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||||||||  | | ||||||||||| |||| |||| |||||||||||  |||||||   | | ||||| |||||| | ||||||||||| |||||||    
T  13867740 aaaaaacgtgtaaaatcaaggttgaaaagctgaccaccatccaaaaaacgcgtgttcttggct-cagaccatcggccaacttgcgtgagttagctcgcgc 13867838  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgactt 233  Q
    |  ||| ||||||||||||||||||||| || || | ||| ||||||   |||||||||||||||||||||||    
T  13867839 accggctagtggtgcgtgacttaagtcatgctga-gctattaggtgcatgagttaagtcacgcagcgtgactt 13867910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 33161919 - 33161827
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| |||||||| |||| ||| | ||||||||||||||||||||| |||||  ||||||||| |  ||||||||||||||    
T  33161919 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaacgtttgttcttcagttctg--caccggccaactagcgtgagttaactc 33161827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 34939348 - 34939491
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcag 193  Q
    |||||| ||| |||||||||| || || || | ||||||||||| | ||||  ||||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  34939348 caccgttcaagaaacgtttgtgctgcagtttttaccaccggccaacttgcggaagttaactcgcgcataggctcagtgttgcgtgacataagtcatgcag 34939447  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || || | |||||||   ||||||||||||  ||||||||||||    
T  34939448 agcttgtgaggtgcgtgtgttaagtcacgctacgtgacttaact 34939491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 33985438 - 33985581
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggcca-gtggtgcgtgacttaagtcacgcag 193  Q
    |||||||||| |||||||||| ||||| || | || |||||||| | ||||  |||||||||||||| ||||   ||| |||||||||||||||||||||    
T  33985438 caccgtccaagaaacgtttgtgcttcagtttttactaccggccaacttgcgcaagttaactcgcgcagaggctttgtgttgcgtgacttaagtcacgcag 33985537  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || || | |||||||  ||||||  ||||  |||||||||||||    
T  33985538 agtttgtgaggtgcgtgagttaaaccacgttgcgtgacttaact 33985581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 51242907 - 51242813
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcac 189  Q
    |||||||||||||||||| | ||||| || ||||||||||||| | ||||  ||||||||||||||||||| |||||||| || || ||||||||    
T  51242907 accgtccaaaaaacgtttatgcttcagttttgaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgtgtcacataagtcac 51242813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 18414118 - 18414190
Alignment:
Q  47 cgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttctt 119  Q
    |||||| | |||||||||||||||| | |||||||||||||| |||| ||||||||||||||| | |||||||    
T  18414118 cgtgtagaagttgtaaaaaacgtgtagcttgaaggttgaaaagctgaccaccgtccaaaaaacatgtgttctt 18414190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 53266083 - 53265990
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||| |||||| ||||||||  |||||||   ||||||||||||||||||||| |||||  ||||||||| |  ||||||||||||||    
T  53266083 aaaaaacgtgtgaattgaatgttgaaaaaatgatcacaaaccaaaaaacgtttgttcttcagttctg--caccggccaactagcgtgagttaactc 53265990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 12572657 - 12572565
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| ||| |||| | || ||| | ||||||||||||||||||||| |||||  ||||||||| |  ||||||||||||||    
T  12572657 aaaaacgtgtggattgaatgttaaaaaacagaccacagaccaaaaaacgtttgttcttcagttctg--caccggccaactggcgtgagttaactc 12572565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 14990249 - 14990439
Alignment:
Q  47 cgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgacc-accggccagcgtgcg 145  Q
    |||||||| ||||||| |||||||| ||||||||||| |||| |||| ||  ||||||||||||| |||| || |  ||| ||| |||||||| | ||||    
T  14990249 cgtgtaaaagttgtaagaaacgtgtagattgaaggttaaaaagctgaccaaagtccaaaaaacgtgtgttttttagctctaaccaaccggccaacctgcg 14990348  T
Q  146 tgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |||||||| ||| |||  ||| |  || || |||||||||||||||| | | ||||||||| |  |||||| | |||  |||||||||||||    
T  14990349 tgagttaattcgtgcaccggctaaaggagcatgacttaagtcacgca-aagctataaggtgtgtgagttaaataacgttgcgtgacttaact 14990439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 40962687 - 40962782
Alignment:
Q  99 gtccaaaaaacgtttgttcttcaattctgacca-ccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcag 193  Q
    ||||||||||||| | ||||| |  |||||||| ||||||| | |||||||||||||||| ||| | |||||||||| ||||||||| ||||||||    
T  40962687 gtccaaaaaacgtgtattcttgagctctgaccaaccggccaacctgcgtgagttaactcgtgcaaatgccagtggtgtgtgacttaactcacgcag 40962782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 47043776 - 47043868
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| ||||||||  ||| ||| | ||||||||||||||||||||| |||||  ||||||||| |  ||| ||||||||||    
T  47043776 aaaaacgtgtggattgaatgttgaaaaattgaccacagaccaaaaaacgtttgttcttcagttctg--caccggccaactggcgcgagttaactc 47043868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 54808994 - 54809136
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| ||| ||||||  |||| || | ||||||||||| | ||||  ||||||||||||||||||| |||||||| | |||||||||||| || |    
T  54808994 accgtccaagaaatgtttgtggttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgtgcgacttaagtcacacata 54809093  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | |||| |||||| || ||||| |  ||| |||| ||||||||    
T  54809094 gattatgaggtgcacatgttaaatatcgctgcgttacttaact 54809136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 14329115 - 14329020
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    ||||||| |||||| |||| ||||||||||||||||  | |||||||| ||||||| ||||  ||||||||||  |||  || |||||||||||||    
T  14329115 aaaaaacatgtggaatgaatgttgaaaacctgatcaaagaccaaaaaatgtttgtttttcagctctgaccaccaaccaaggtacgtgagttaactc 14329020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 46814143 - 46814084
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttca 121  Q
    |||||||||||||||||| |||||||| |||| ||| | |||||||| ||||||||||||    
T  46814143 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaatgtttgttcttca 46814084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 21058683 - 21058745
Alignment:
Q  179 acttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    |||||||||||||| |||    || ||||||| ||||||||||||||||||||||||||||||    
T  21058683 acttaagtcacgcataggactcaacgtgcgcatgttaagtcacgcagcgtgacttaacttgcg 21058745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 28796911 - 28796846
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctg 127  Q
    |||||||||||||||||| |||||||| |||| |||   |||||||| |||||||||||| |||||    
T  28796911 aaaaacgtgtggattgaatgttgaaaaactgaccacataccaaaaaatgtttgttcttcagttctg 28796846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 36174367 - 36174432
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctg 127  Q
    ||||||||||||||| || |||||||| |||| ||| | ||||||||||||| ||||||| |||||    
T  36174367 aaaaacgtgtggattaaatgttgaaaaactgaccacagaccaaaaaacgtttcttcttcagttctg 36174432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 47020152 - 47020057
Alignment:
Q  106 aaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttata 201  Q
    |||||||| | ||||| || | ||||||| ||| | ||||  |||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||    
T  47020152 aaacgtttttgcttcagtttttaccaccgtccaacttgcgcaagttaactcgcgcagaggctcagtggtgcgtgacttaactcacgca-aggttata 47020057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 26973406 - 26973372
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttg 239  Q
    |||| ||||||||||||||||||||||||||||||    
T  26973406 tgcgtaagttaagtcacgcagcgtgacttaacttg 26973372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 32310356 - 32310394
Alignment:
Q  204 gtgcgcaagttaagtcacgcagcgtgacttaacttgcgt 242  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  32310356 gtgcgcaagttaagacacgcagcgtgactttacttgcgt 32310394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 36046938 - 36047024
Alignment:
Q  152 aactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |||| |||||||||| |||||||||| ||||||||||||||| || || | |||||  || |||||||| ||| |||| ||||||||    
T  36046938 aacttgcgcataggctcagtggtgcgcgacttaagtcacgcaaagcttgtgaggtgtacatgttaagtctcgctgcgttacttaact 36047024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 42563153 - 42563215
Alignment:
Q  179 acttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    |||||||||||||| | | || ||  |||||| ||||| ||||||||||||||||||||||||    
T  42563153 acttaagtcacgcataagatacaacatgcgcaggttaaatcacgcagcgtgacttaacttgcg 42563215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 46567389 - 46567339
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgt 111  Q
    |||||| |||| ||||||  ||||||||||||| |||||||||||||||||    
T  46567389 aaaaaatgtgtagattgagtgttgaaaacctgaccaccgtccaaaaaacgt 46567339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 850633 - 850670
Alignment:
Q  204 gtgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  850633 gtgcgcaagttaagacacgcagcatgacttaacttgcg 850670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 8932589 - 8932529
Alignment:
Q  176 gtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |||||||||||||||||||| | ||||||||||  ||||||||||| | | |||||||||||    
T  8932589 gtgacttaagtcacgcagagct-ataaggtgcgtgagttaagtcacactgtgtgacttaact 8932529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 39463115 - 39463078
Alignment:
Q  204 gtgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  39463115 gtgcgcatgttaagtcacgcagcgtaacttaacttgcg 39463078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 21058747 - 21058711
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  21058747 tgcgcaagttaagtcacgctgcgtgacttaacatgcg 21058711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 38131387 - 38131423
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||||||||||||||| || ||||||||||||||    
T  38131387 tgcgcaagttaagtcacgctgcatgacttaacttgcg 38131423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 45042998 - 45043090
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagt 186  Q
    |||||||| |||||||||||| ||||| || | ||||||||||| | | ||  ||||||||| |  | |||| ||||||||||||||||||||    
T  45042998 caccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttacgcaagttaactcacatagaggctcagtggtgcgtgacttaagt 45043090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 48577446 - 48577410
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    |||||||||||||||||||| |||| |||||||||||    
T  48577446 tgcgcaagttaagtcacgcaacgtgtcttaacttgcg 48577410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 52032691 - 52032771
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtg 174  Q
    |||||||| |||||||||||| ||| | || | |||||||||||   ||||  ||||||||||||||||||| ||||||||    
T  52032691 caccgtcccaaaaacgtttgtgctttagtttttaccaccggccaatttgcgcaagttaactcgcgcataggctcagtggtg 52032771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 48 - 282
Target Start/End: Original strand, 34471536 - 34471770
Alignment:
Q  48 gtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtg 147  Q
    |||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||    
T  34471536 gtgtaaagtttgtagaaaatgtgtggattgaaggttgaaaacctgaccaccgtccaaaaaacgtttgttcttcagttctaaccaccggccaacgtgcgtg 34471635  T
Q  148 agttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagag 247  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||       
T  34471636 agttaactcgcgcata-gccaatggtgcgtgacttaagtcacgcatagtttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgcaaaga 34471734  T
Q  248 catttttgatatagctgca-ggtgcgagcaaaatgt 282  Q
    ||||||||| || |||||| || |||||||||||||    
T  34471735 catttttgacatggctgcagggcgcgagcaaaatgt 34471770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 71 - 284
Target Start/End: Original strand, 43693531 - 43693745
Alignment:
Q  71 tggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagt 170  Q
    |||| |||| |||| ||| |||||||  | |||||||||||||||||||||  |||||||||||||||  ||||||||||| ||||||||||| |||| |    
T  43693531 tggaatgaatgttggaaaactgatcaaggaccaaaaaacgtttgttcttcagctctgaccaccggccatggtgcgtgagtttactcgcgcataagccatt 43693630  T
Q  171 ggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatatagctgca-ggt 269  Q
    ||||||||| ||||||||| || || ||||||||||||| ||||||||||||| ||||||| ||||| ||| |||  ||||||||  || |||||| ||     
T  43693631 ggtgcgtgaattaagtcacacatagattataaggtgcgctagttaagtcacgctgcgtgacctaactagcgcaaggacatttttggcatggctgcagggc 43693730  T
Q  270 gcgagcaaaatgtgc 284  Q
    |||||||||||||||    
T  43693731 gcgagcaaaatgtgc 43693745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 23542699 - 23542872
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||| ||||||| |||| |||||||| |||| ||  | | |||||| |||||||||||| |||||||||||| ||| ||||| |||||||||||||||    
T  23542699 aaaaaatgtgtggagtgaatgttgaaaaactgaccaaagacaaaaaaatgtttgttcttcagttctgaccaccgaccaacgtgcatgagttaactcgcgc 23542798  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgactta 234  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||| |  | ||||||||||||| ||||||||    
T  23542799 ataggccagtggtgcgtgaattaagtcacgcagagcttatacggtgtgttatttaagtcacgcagtgtgactta 23542872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 5913106 - 5913248
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||| | |||||||||| ||||| || | ||||||||||| | |||| |||||||||||| || |||| || ||||| |||||||||||||||||||    
T  5913106 accgtcccagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcgagttaactcgcacagaggctcaatggtgtgtgacttaagtcacgcaga 5913205  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | |||||||  ||||||||||||| | |||||||||||    
T  5913206 gcttgtgaggtgcgtgagttaagtcacgcggtgtgacttaact 5913248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 4759208 - 4759341
Alignment:
Q  106 aaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttataagg 204  Q
    |||||||||| ||||| || | ||||||| ||| | ||||  |||||||||||||| |||| ||||||||| ||||||||||||||||||| || | |||    
T  4759208 aaacgtttgtgcttcagtttttaccaccgtccaacttgcgcaagttaactcgcgcagaggctcagtggtgcatgacttaagtcacgcagagcttgtgagg 4759307  T
Q  205 tgcgcaagttaagtcacgcagcgtgacttaactt 238  Q
    ||||   |||||||||||  ||||||||||||||    
T  4759308 tgcgtgtgttaagtcacgttgcgtgacttaactt 4759341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 43835266 - 43835458
Alignment:
Q  47 cgtgtaaaggttgtaaaaaa-cgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcg 145  Q
    ||||||||  |||||||||| ||||| || | |||||||||||||| | ||||||||||||||||| ||||||| |  || | | |||| ||| | | |     
T  43835266 cgtgtaaaacttgtaaaaaatcgtgtagaatcaaggttgaaaacctaaccaccgtccaaaaaacgtgtgttcttgagctcaggctaccgaccaacctaca 43835365  T
Q  146 tgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggt-tataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||| |||||||||||| || || ||||||||||||||||||||||| ||| | ||| ||||| |  |||||||||  || |||||||||||||    
T  43835366 tgaattaactcgcgcacagaccggtggtgcgtgacttaagtcacgctgagctctattaggtgtgtgagttaagtcctgctgcgtgacttaact 43835458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 1217889 - 1217746
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcag 193  Q
    |||||||| | ||||||||||  |||| || | ||||||||||| | ||||  ||| |||||||||| |||| | ||||||||||||||||||||| ||     
T  1217889 caccgtcccagaaacgtttgtgtttcagtttttaccaccggccaacttgcgcaagtcaactcgcgcagaggctcggtggtgcgtgacttaagtcacacaa 1217790  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || || | |||||||  |||||||||||||| ||||||||||||    
T  1217789 agcttgtgaggtgcgtgagttaagtcacgcaacgtgacttaact 1217746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 15743234 - 15743321
Alignment:
Q  151 taactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||  |||||||||  || |||||||||||||    
T  15743234 taactcgcgcataggctcagtggtgcgtgacttaagtcacgcagagcttgtgaggtgcgtgagttaagtcttgctgcgtgacttaact 15743321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 42182749 - 42182615
Alignment:
Q  104 aaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttataa 202  Q
    |||||||||||| ||||| || | ||||||||||| | ||||  |||||||||||| | || | ||||||||||||||||| |||||| |||| || | |    
T  42182749 aaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagagactcagtggtgcgtgacttaggtcacgtagagcttgtga 42182650  T
Q  203 ggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | ||||  ||||||||||||||| |||||||||||    
T  42182649 gatgcgtgagttaagtcacgcagtgtgacttaact 42182615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 9039730 - 9039620
Alignment:
Q  128 accaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagc 226  Q
    ||||||||||| | ||||  |||||||||||||| |||  |||||||| ||||||||||||||||| ||||| | |||||||  ||||||| ||||| ||    
T  9039730 accaccggccaacttgcgcaagttaactcgcgcagaggttcagtggtgtgtgacttaagtcacgcaaaggttgtgaggtgcgtgagttaaggcacgctgc 9039631  T
Q  227 gtgacttaact 237  Q
    ||| |||||||    
T  9039630 gtggcttaact 9039620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 4322788 - 4322651
Alignment:
Q  101 ccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggtta 199  Q
    |||| |||| ||||| ||||| || | |||||||| || | ||||  ||||||||||||||||||| |||||||||||||| ||||| |||||||  ||     
T  4322788 ccaagaaacatttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacctaagttacgcagaacttg 4322689  T
Q  200 taaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | |||||||  ||||||||| ||| |||||| ||||||    
T  4322688 tgaggtgcgtgagttaagtctcgctgcgtgagttaact 4322651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 4639908 - 4639835
Alignment:
Q  58 tgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgacca 131  Q
    |||||||||||| |||||| |  |||||||| |||||||| | ||||||||| |||||||||||||||||||||    
T  4639908 tgtaaaaaacgtatggattaactgttgaaaaactgatcacagaccaaaaaacatttgttcttcaattctgacca 4639835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 2766852 - 2766914
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcg 157  Q
    ||||||||||||||||||||||||||| || ||||||| ||||| | |||||| |||||||||    
T  2766852 caccgtccaaaaaacgtttgttcttcagttttgaccactggccaacttgcgtgcgttaactcg 2766914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 35161702 - 35161562
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    |||||| || |||||||||| ||||| || | |||||||| || | ||||  ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  35161702 accgtctaagaaacgtttgtgcttcagtttt-accaccggtcaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgac-taagtcacgcaga 35161605  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | ||||| |   |||||||| ||| || ||||||||||    
T  35161604 gcttgtgaggtgggtgtgttaagtctcgctgcatgacttaact 35161562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 28704133 - 28704040
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaa-cgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| |||||||| |||  ||| | |||||||| |||||||||||||||||||  ||||||||| |  ||| ||||||||||    
T  28704133 aaaaacgtgtggattgaatgttgaaaaactgtccacagaccaaaaaaacgtttgttcttcaattctg--caccggccaactggcgcgagttaactc 28704040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 3964100 - 3964008
Alignment:
Q  100 tccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcag 193  Q
    |||||||||| | ||||||| |  ||| ||||||||||| | |||||||||||||||||| | | | ||||| |||||||||||| ||||||||    
T  3964100 tccaaaaaacatgtgttcttgagctctaaccaccggccaacttgcgtgagttaactcgcggaca-gacagtgatgcgtgacttaattcacgcag 3964008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 43635399 - 43635334
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctg 127  Q
    |||||||||||||||||| |||||||| |||| |||    |||||||||||||||||||| |||||    
T  43635399 aaaaacgtgtggattgaatgttgaaaaactgaccacaaatcaaaaaacgtttgttcttcagttctg 43635334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 34471730 - 34471694
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||||||||||||||| |||||||||||||||||    
T  34471730 tgcgcaagttaagtcacgctgcgtgacttaacttgcg 34471694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 5944159 - 5944125
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttg 239  Q
    ||||||||||||||||||||||||| |||||||||    
T  5944159 tgcgcaagttaagtcacgcagcgtgtcttaacttg 5944125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 20520480 - 20520418
Alignment:
Q  179 acttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    |||||||||||||| |||    || ||||||| |||||||||| |||||||||||||||||||    
T  20520480 acttaagtcacgcataggactcaacgtgcgcatgttaagtcacacagcgtgacttaacttgcg 20520418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 20669802 - 20669835
Alignment:
Q  207 cgcaagttaagtcacgcagcgtgacttaacttgc 240  Q
    |||| |||||||||||||||||||||||||||||    
T  20669802 cgcatgttaagtcacgcagcgtgacttaacttgc 20669835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 1931439 - 1931343
Alignment:
Q  142 tgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggt-tataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||||||||||| ||||  || |||||||||||||| |||||| ||| | ||  | ||| |||||||  |||||||||||  ||||||||||||||    
T  1931439 tgcgtgagttaacccgcgtctatgccagtggtgcgtgccttaagccacactgaactctattaggtgcgtgagttaagtcacatagcgtgacttaact 1931343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 47 - 255
Target Start/End: Complemental strand, 319369 - 319161
Alignment:
Q  47 cgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgt 146  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||  ||| |||||||    
T  319369 cgtgtaaagtttgtagaaaacgtgtggattgaaggttgaaaacctgaccaccatccaaaaaacgtttgttcttcagttctgaccaccacccaacgtgcgt 319270  T
Q  147 gagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaaga 246  Q
    |||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||||||||| ||||    
T  319269 gagttaactcgcgcatagaccagtggtgcatgacttaagtcacacagaggttataaggtgcgcaagttaaattacacagcgtgacttaacttgcgcaaga 319170  T
Q  247 gcatttttg 255  Q
    |||||||||    
T  319169 gcatttttg 319161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 13312717 - 13312541
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||||||||| |||||| |||||| | | || ||  |||||||||| |||||||||||| ||||||||| |||||| ||| |||||||||||||| ||    
T  13312717 aaaaaacgtgtgaattgaatgttgaataaccgaccatagtccaaaaaatgtttgttcttcagttctgaccatcggccaacgtacgtgagttaactcgtgc 13312618  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
      ||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  13312617 ccaggccagtggttcgtgacttaagtcacgcagagcttataaggtgcgttagttaagtcacgcagcgtgacttaact 13312541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 23912240 - 23912378
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||||||||||| | ||||| |  ||| ||||||||||| | ||||||| |||||||||||| | ||||||||||| ||||||||||||||||||    
T  23912240 caccgtccaaaaaacgtgtattcttgagctctaaccaccggccaacttgcgtgaattaactcgcgcacatgccagtggtgcatgacttaagtcacgcaga 23912339  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgactt 233  Q
    | ||||||||||||  ||||||||||| | |||||||||    
T  23912340 gcttataaggtgcgtgagttaagtcacacggcgtgactt 23912378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 30634104 - 30634247
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcag 193  Q
    |||||||| |||||||||||| ||||| || | ||||||||||| | ||||  ||||||||| || | |||| |||||||||||||||||||||||| ||    
T  30634104 caccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcacgtagaggctcagtggtgcgtgacttaagtcacgtag 30634203  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || || | |||||||  ||||||||| ||| |||||||||||||    
T  30634204 agcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaact 30634247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 11599116 - 11598974
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | ||||||||||| | ||||  ||||||||||||||||||| | ||||||| ||||||||||||||||||    
T  11599116 accgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcggtggtgcatgacttaagtcacgcaga 11599017  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | |||||||  ||||||||| ||| | |||| ||||||    
T  11599016 gcttgtgaggtgcgtgagttaagtctcgcggtgtgagttaact 11598974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 235
Target Start/End: Original strand, 3515207 - 3515348
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcag 193  Q
    |||||||| |||||||||||| || || || | ||||||||||| | ||||  |||||||||||| | |||| ||||||||||||||||||||||||||     
T  3515207 caccgtccgaaaaacgtttgtgctacagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggctcagtggtgcgtgacttaagtcacgcaa 3515306  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaa 235  Q
    || || | | |||||  ||||||||||| | | |||||||||    
T  3515307 agcttgtgaagtgcgtgagttaagtcacactgtgtgacttaa 3515348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 2419754 - 2419849
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgc 158  Q
    ||||||||||  |||||| ||||||||||||| ||  ||  |||||| |||||||||||| |||||||||||||||| | |||||||||||||||||    
T  2419754 aaaaacgtgtaaattgaatgttgaaaacctgaccaaagtg-aaaaaatgtttgttcttcagttctgaccaccggccaacttgcgtgagttaactcgc 2419849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 24173688 - 24173565
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||||| |||||||||| |||||||| |||| ||  |  ||||||| |||||||||||| |||||||  ||||||| | |||||||||||||| ||      
T  24173688 aaaaaacgcgtggattgaatgttgaaaaactgaccaaagatcaaaaaatgtttgttcttcagttctgacagccggccaacatgcgtgagttaacttgcag 24173589  T
Q  161 ataggccagtggtgcgtgacttaa 184  Q
    | | | ||||||||||||||||||    
T  24173588 acaagtcagtggtgcgtgacttaa 24173565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 14153644 - 14153552
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    |||||||||||||||||| |||||||| |||| | | | ||||||||||||||||||||| |||||  ||||||||| |  ||| ||||||||||    
T  14153644 aaaaacgtgtggattgaatgttgaaaaactgaccgcagaccaaaaaacgtttgttcttcagttctg--caccggccaactagcgcgagttaactc 14153552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 16444556 - 16444465
Alignment:
Q  63 aaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    ||||||||||||||||| |||||||| |||| ||| | || ||||| |||||||||||| |||||  ||||||||| |  ||||||||||||||    
T  16444556 aaaacgtgtggattgaatgttgaaaaactgaccacagaccgaaaaatgtttgttcttcagttctg--caccggccaactagcgtgagttaactc 16444465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 17399098 - 17399041
Alignment:
Q  127 gaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaa 184  Q
    |||||||||||| | ||||||||||||||||| || | ||||||||||||||||||||    
T  17399098 gaccaccggccaacttgcgtgagttaactcgcacacatgccagtggtgcgtgacttaa 17399041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 35053597 - 35053532
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctg 127  Q
    |||||||||||||||||| |||||||| |||| ||| | |||| |||||||||||||||| |||||    
T  35053597 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaacaaacgtttgttcttcagttctg 35053532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 9521462 - 9521402
Alignment:
Q  142 tgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataa 202  Q
    |||| ||||||| ||||| | | ||||||||||||||||||||||||||||||| ||||||    
T  9521462 tgcgggagttaagtcgcgaacatgccagtggtgcgtgacttaagtcacgcagagcttataa 9521402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 7526846 - 7526809
Alignment:
Q  204 gtgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    |||||||||||||| |||||||||||||||||||||||    
T  7526846 gtgcgcaagttaagacacgcagcgtgacttaacttgcg 7526809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 14830675 - 14830590
Alignment:
Q  69 tgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    ||||||||||| |||||||| |||| ||| | |||||| |||||||||||||| |||||  ||||||||| |  ||| ||||||||||    
T  14830675 tgtggattgaatgttgaaaaactgaccacagaccaaaacacgtttgttcttcagttctg--caccggccaactggcgcgagttaactc 14830590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 4362406 - 4362449
Alignment:
Q  198 tataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||    
T  4362406 tataacgtgcgcaagttaaggcacgcaacgtgacttaacttgcg 4362449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 1077660 - 1077587
Alignment:
Q  163 aggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||||||||||||| |||||| |||||||||   |||||| ||||  |||||||| |||| |||||||||||||    
T  1077660 aggccagtggtgcgtaacttaaatcacgcaga-actataagctgcgtgagttaagttacgctgcgtgacttaact 1077587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 7526807 - 7526843
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  7526807 tgcgcaagttaagtcacgctgcgtgtcttaacttgcg 7526843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 47 - 254
Target Start/End: Original strand, 18239349 - 18239556
Alignment:
Q  47 cgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgt 146  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| ||| |||||||    
T  18239349 cgtgtaaaggttgtaaaaaatgtgtggattgaaggttgaaaacctgaccaccgttcaaaaaacgtttgttcttcagttctgaccaccgaccaacgtgcgt 18239448  T
Q  147 gagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaaga 246  Q
     ||||||||||||||||||||| || ||||||||||||||||| |||| |||||||||||  ||||||||||||||||||||||||||||||| | |||     
T  18239449 tagttaactcgcgcataggccattgatgcgtgacttaagtcacacagatgttataaggtgtacaagttaagtcacgcagcgtgacttaacttgtgcaagg 18239548  T
Q  247 gcattttt 254  Q
    ||||||||    
T  18239549 gcattttt 18239556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 57 - 266
Target Start/End: Original strand, 41219327 - 41219536
Alignment:
Q  57 ttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    ||||| ||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  41219327 ttgtagaaaacgtgtggattgaaggttgaaaacctgaccaccatacaaaaaacgtttgttcttcagttctgaccaccagccaacgtgcgtgagttaactc 41219426  T
Q  157 gcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttga 256  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||| || |||||||||||| ||   |||||||||    
T  41219427 gcgcataggccagtgatgcgtgacttaagtcacgcagaggttataagatgcgcaagttaaatcacgcagtgtaacttaacttgcgcaatgacatttttga 41219526  T
Q  257 tatagctgca 266  Q
     || ||||||    
T  41219527 catggctgca 41219536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 118 - 287
Target Start/End: Original strand, 27874038 - 27874208
Alignment:
Q  118 ttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaag 217  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  27874038 ttcagttctgaccaccggccaacgtgcgtgagttaactcgcgcataggtcagtggtgcgtggcttaagtcacgcagaggttatatggtgcgcaagttaag 27874137  T
Q  218 tcacgcagcgtgacttaacttgcgtaagagcatttttgatatagctgcagg-tgcgagcaaaatgtgctgg 287  Q
     ||||||||||||||||||||||| |||  ||||||||  || ||||||||  ||||||||||||||||||    
T  27874138 ccacgcagcgtgacttaacttgcgcaaggacatttttggcatggctgcaggacgcgagcaaaatgtgctgg 27874208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 101 - 284
Target Start/End: Complemental strand, 39476619 - 39476435
Alignment:
Q  101 ccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttat 200  Q
    |||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||    
T  39476619 ccaaaaaacgtttgttcttcagctctgaccaccggccatggtgcgtgagttaactcgcgcataggctaatggtgcgtgacttaagtcacgcatagattat 39476520  T
Q  201 aaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatatagctgc-aggtgcgagcaaaatgtgc 284  Q
    ||||||||| ||||||||||||| || ||||||||||  |||||| |||||||| | || ||||| ||| |||||||||||||||    
T  39476519 aaggtgcgctagttaagtcacgctgcatgacttaactaacgtaagggcatttttaacatggctgcaaggcgcgagcaaaatgtgc 39476435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 47 - 237
Target Start/End: Complemental strand, 8261025 - 8260834
Alignment:
Q  47 cgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgt 146  Q
    |||||||| || || ||||||||||   ||||| |||||||||| || ||  ||  ||||||||||||||| ||| |||||||||||||||| | |||||    
T  8261025 cgtgtaaaagtggttaaaaacgtgtaagttgaatgttgaaaacccgaccaaagtgaaaaaaacgtttgttcatcagttctgaccaccggccaacttgcgt 8260926  T
Q  147 gagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||||    
T  8260925 gagttaactcgcgcaaaggctcagtggtgcgtgacttaagtcacgcagagattataaggtgcatgagttaagtcacgcagcgtgacttaact 8260834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 37524113 - 37524260
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||| |||||||||||| |||||||| |||| ||  | |||||||||| |||| ||||| ||||||||||| |||| |||||||||| ||||||||||    
T  37524113 aaaaaatgtgtggattgaatgttgaaaaactgaccaaagaccaaaaaacggttgtacttcagttctgaccaccagccaacgtgcgtgaggtaactcgcgc 37524212  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcg 208  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||    
T  37524213 acaggccagtggtgcgtgacttaagtcacgcagagcttataaggtgcg 37524260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 34354385 - 34354492
Alignment:
Q  101 ccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttat 200  Q
    ||||||||| ||||||||||||  |||| |||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||  |||    
T  34354385 ccaaaaaacatttgttcttcaacactgatcaccagccaacgtgtgtgagttaactcgcgcataggccagtggtacgtgacttaagtcacgcagagcatat 34354484  T
Q  201 aaggtgcg 208  Q
    ||||||||    
T  34354485 aaggtgcg 34354492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 39284087 - 39283944
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcag 193  Q
    |||||||| |||||||||||| ||||| || | ||||||| ||| | ||||  | |||||||||| | |||| |||||||||||||||||||||||||||    
T  39284087 caccgtcccaaaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaaattaactcgcgtagaggctcagtggtgcgtgacttaagtcacgcag 39283988  T
Q  194 aggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || |||| |||||||  ||||||| ||||| |||||||||||||    
T  39283987 agcttatgaggtgcgtgagttaagccacgctgcgtgacttaact 39283944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 21153887 - 21153753
Alignment:
Q  59 gtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgc 158  Q
    ||||||||||||| || |||| || ||||| |||| ||  | ||||||||||| |||||||||  || |||||||||||  ||||||||||||||||| |    
T  21153887 gtaaaaaacgtgtagactgaatgtggaaaaactgagcaaagaccaaaaaacgtctgttcttcagctccgaccaccggccgacgtgcgtgagttaactcac 21153788  T
Q  159 gcataggccagtggtgcgtgacttaagtcacgcag 193  Q
    ||| | |||||||||||||||||||| ||||||||    
T  21153787 gcacatgccagtggtgcgtgacttaactcacgcag 21153753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 4035142 - 4035284
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    |||||| || |||| ||||| ||||| || | ||||||||||| | ||||  ||||||||||||||||||| |||||||||||||||||||||||||||     
T  4035142 accgtctaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcagg 4035241  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | ||||||   ||||||||| ||| |||||||||||||    
T  4035242 gattgtgaggtgcatgagttaagtctcgctgcgtgacttaact 4035284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 29714359 - 29714254
Alignment:
Q  131 accggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtga 230  Q
    |||||||| | |||||||||||||||||||  | | ||||||||| |||||||||||||||||| | |||||||||||  | ||||||||||||||||||    
T  29714359 accggccaacctgcgtgagttaactcgcgcccaagtcagtggtgcatgacttaagtcacgcaga-gctataaggtgcgtgatttaagtcacgcagcgtga 29714261  T
Q  231 cttaact 237  Q
    |||||||    
T  29714260 cttaact 29714254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 3742360 - 3742498
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | ||||||||||| | ||||  ||||||||| ||||||||| ||||||||    ||||||||||| ||||    
T  3742360 accgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcacgcataggctcagtggtg----acttaagtcacacaga 3742455  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | |||||| |||||| |||||| |||||| || ||||||||||    
T  3742456 gattataaagtgcgctagttaaatcacgctgcatgacttaact 3742498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 37450099 - 37449984
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | |||||||| || | ||||  |||||||||| |||||||| ||||| |||| ||||||||||||||| |    
T  37450099 accgtccaagaaacgtttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgtgcataggctcagtgatgcgcgacttaagtcacgcaaa 37450000  T
Q  195 ggttataaggtgcgca 210  Q
    | ||||||||||||||    
T  37449999 gattataaggtgcgca 37449984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 14678402 - 14678288
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcag 193  Q
    |||||||||| |||||||||| || || || | ||||||||||| | ||||  ||||||||| | || |||| |||||||||||||||||||||||| ||    
T  14678402 caccgtccaagaaacgtttgtgctgcagtttttaccaccggccaacttgcgcaagttaactcacacagaggctcagtggtgcgtgacttaagtcacgtag 14678303  T
Q  194 aggttataaggtgcg 208  Q
    ||||| | |||||||    
T  14678302 aggttgtgaggtgcg 14678288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 26502218 - 26502283
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctg 127  Q
    |||||||||||||||||| |||||||| |||| ||| | ||||||||||||||||||||| |||||    
T  26502218 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaacgtttgttcttcagttctg 26502283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 26590496 - 26590431
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctg 127  Q
    |||||||||||||||||| |||||||| |||| ||| | ||||||||||||||||||||| |||||    
T  26590496 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaacgtttgttcttcagttctg 26590431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 35126179 - 35126316
Alignment:
Q  48 gtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtg 147  Q
    |||||||  ||||||||||||  | || | |||||||||||||| | |||||||||||||| || | ||||| |  || |||||| |||||   | ||||    
T  35126179 gtgtaaaaattgtaaaaaacgcatagaatcaaggttgaaaacctaaccaccgtccaaaaaatgtgtattcttgagctcagaccactggccaatctacgtg 35126278  T
Q  148 agttaactcgcgcataggccagtggtgcgtgacttaag 185  Q
    |||||||||||||| || ||||| ||||||||||||||    
T  35126279 agttaactcgcgcacagaccagttgtgcgtgacttaag 35126316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 21613112 - 21613032
Alignment:
Q  104 aaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaa 184  Q
    ||||||||  |||||||| ||||||||||||| ||   |||||||||||||||||||| | |||| |||||||||||||||    
T  21613112 aaaaacgtgagttcttcagttctgaccaccggtcaagctgcgtgagttaactcgcgcacatgccaatggtgcgtgacttaa 21613032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 48212070 - 48212011
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttca 121  Q
    |||||||||||||||||| |||||||| |||| ||| | |||||||||||||||||||||    
T  48212070 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaacgtttgttcttca 48212011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 1537033 - 1537099
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtcc-aaaaaacgtttgttcttcaattctg 127  Q
    |||||||||||||||||| |||||||| |||| ||| | || ||||||||||||||||||| |||||    
T  1537033 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaaacgtttgttcttcagttctg 1537099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 38791137 - 38791072
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtcc-aaaaaacgtttgttcttcaattct 126  Q
    |||||||||||||||||| |||||||| |||| ||| | || ||||||||||||||||||| ||||    
T  38791137 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaaacgtttgttcttcagttct 38791072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 38455066 - 38455102
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||||||||||||||||||||| |||||||||||    
T  38455066 tgcgcaagttaagtcacgcagcgtgtcttaacttgcg 38455102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 30362767 - 30362812
Alignment:
Q  147 gagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgc 191  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||    
T  30362767 gagttaactcgcgctaaggctcagtggtgcgtgacttaagtcacgc 30362812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 31826015 - 31826080
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctg 127  Q
    |||||||||||||||||| |||||||| |||| |||   | |||||| || |||||||||||||||    
T  31826015 aaaaacgtgtggattgaatgttgaaaaactgaccacatacaaaaaaatgtctgttcttcaattctg 31826080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 33803040 - 33802972
Alignment:
Q  95 caccgtccaaaaaa-cgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcata 163  Q
    |||||||||||||| ||||||||||||| || |||||||||| || | |||| | |||||||||||||||    
T  33803040 caccgtccaaaaaaacgtttgttcttcagttttgaccaccgg-caacttgcgcgcgttaactcgcgcata 33802972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 38455105 - 38455068
Alignment:
Q  204 gtgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  38455105 gtgcgcaagttaagacacgctgcgtgacttaacttgcg 38455068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 40144784 - 40144869
Alignment:
Q  107 aacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgc 191  Q
    ||||||||| ||||| || | ||||||||||| | ||||   ||||| |||| ||||| | |||||||||||||||||||||||||    
T  40144784 aacgtttgtgcttcagtttttaccaccggccaacttgcgcaggttaagtcgcacatagactcagtggtgcgtgacttaagtcacgc 40144869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 27874163 - 27874127
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  27874163 tgcgcaagttaagtcacgctgcgtggcttaacttgcg 27874127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 41758626 - 41758829
Alignment:
Q  19 ataaccaccataaacgtggtcnnnnnnncgtgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttct 118  Q
    |||||||||||||| ||||||       ||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41758626 ataaccaccataaatgtggtcaaaaaaacgtgtaaagtttgtagaaaatgtgtggattgaaggttgaaaacctgaccaccgtccaaaaaacgtttgttct 41758725  T
Q  119 tcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagt 218  Q
    ||| ||||||||||| |||| ||||| |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  41758726 tcagttctgaccaccagccaacgtgcatgagttaactcgcgcataggtcaatggtgcgtgactcaagtcacgcagaggttataaaatgcgcaagttaagt 41758825  T
Q  219 cacg 222  Q
    ||||    
T  41758826 cacg 41758829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 61 - 284
Target Start/End: Original strand, 1172892 - 1173116
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||||| ||||||| |||| ||||||||||||| ||  | |||||||||||||||||||||  ||| |||| || |||  ||||||||||||||| ||||    
T  1172892 aaaaaatgtgtggaatgaatgttgaaaacctgaccaaagaccaaaaaacgtttgttcttcagctctaaccatcgaccaaggtgcgtgagttaactggcgc 1172991  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgtaagagcatttttgatata 260  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||  || ||| |||| ||||||||     
T  1172992 ataggccagtggtgcgtaacttaagtcacgcagaggttataaggtgcgcttgttaagtcacgctgcgtgacttaactaacgcaagggcatatttgatatg 1173091  T
Q  261 gctgcag-gtgcgagcaaaatgtgc 284  Q
     |||||| | |||||| ||||||||    
T  1173092 cctgcagtgcgcgagccaaatgtgc 1173116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 59 - 237
Target Start/End: Complemental strand, 6427415 - 6427238
Alignment:
Q  59 gtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgc 158  Q
    |||||||||||||||| |||| |||| ||| ||||| |  | |||||||||||||||||||||  ||| | |||||||||  ||||||||||||||||||    
T  6427415 gtaaaaaacgtgtggaatgaatgttggaaaactgataag-gaccaaaaaacgtttgttcttcagctctaatcaccggccaaggtgcgtgagttaactcgc 6427317  T
Q  159 gcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||| ||  |||||||||    
T  6427316 gcataggccagttgtgcgtgacttaagtcacgcatagtttataaggtgcgctagttaagtcacgctgcaagacttaact 6427238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 7083928 - 7084104
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    |||| ||||||||| |||  |||| ||| |||||||  | ||||||||  ||||| |||||  |||||||||||||||  |||| |||||||||||||||    
T  7083928 aaaacacgtgtggaatgagtgttggaaaactgatcaaggaccaaaaaatatttgtccttcagctctgaccaccggccaaggtgcatgagttaactcgcgc 7084027  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |||||||| | ||||||||||||||||||||| || ||||||||||||| ||||||||||||| |||||||||||||    
T  7084028 ataggccattagtgcgtgacttaagtcacgcatagattataaggtgcgctagttaagtcacgctgcgtgacttaact 7084104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 61 - 235
Target Start/End: Original strand, 28784726 - 28784900
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    ||||||||||| ||||||| |||||| | |||| ||  ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |    
T  28784726 aaaaaacgtgtagattgaatgttgaataactgaccaaagtccaaaaaacgtttgttcttcagttctgaccaccgaccaacgtgcgtgagttaactcgcac 28784825  T
Q  161 ataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaa 235  Q
      |||||||||| | ||||||||||||||||| |  |||||||||| |   ||||||||||||||||| ||||||    
T  28784826 ccaggccagtggggtgtgacttaagtcacgcataaattataaggtgtgtttgttaagtcacgcagcgtaacttaa 28784900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 25898765 - 25898634
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||| | || || ||||||| |||| ||||||||||||||||| |||    
T  25898765 aaaaaacgtgtagattgaaggttaaaaacctgaccaccgtccaaaaatcgtttgttcatgaactcagaccaccagccaacgtgcgtgagttaactcacgc 25898666  T
Q  161 ataggccagtggtgcgtgacttaagtcacgca 192  Q
     |||||||||||||  |||||||| |||||||    
T  25898665 ctaggccagtggtgtatgacttaaatcacgca 25898634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 1081878 - 1082020
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | |||||||| || | ||||  ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1081878 accgtccaagaaacgtttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcaga 1081977  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | |||||||  ||||||||| ||| |||||||||||||    
T  1081978 gcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaact 1082020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 11125740 - 11125916
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccacc-ggccagcgtgcgtgagttaactcgcg 159  Q
    ||||||||||| |||||||||||||||| |||| ||  |||||||||| || |||| || |  |||||||| | ||||| |  |||||||||||||||||    
T  11125740 aaaaaacgtgtagattgaaggttgaaaagctgaccaaagtccaaaaaatgtgtgtttttgagctctgaccaactggccaaccggcgtgagttaactcgcg 11125839  T
Q  160 cataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    || | ||||||| ||| |||||||||||||||||| | |||||||||||  ||||||||||||  |||||||||||||    
T  11125840 cacatgccagtgatgcatgacttaagtcacgcaga-gctataaggtgcgtgagttaagtcacgttgcgtgacttaact 11125916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 10532923 - 10532795
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    ||||||||||| |||| || ||||||||  ||| ||  | |||||||||||||||||||||  ||||||||||||||| | |||||||||||||||||||    
T  10532923 aaaaaacgtgtagattaaatgttgaaaaattgaccaaagaccaaaaaacgtttgttcttcagctctgaccaccggccaacttgcgtgagttaactcgcgc 10532824  T
Q  161 ataggccagtggtgcgtgacttaagtcac 189  Q
    | | ||||||||||| |||||||| ||||    
T  10532823 acaagccagtggtgcatgacttaactcac 10532795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 2786829 - 2786687
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    |||||||||||||  ||||| ||||| || | ||||||||||| | ||||  ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  2786829 accgtccaaaaaatatttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacgcaga 2786730  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | |||||||  ||||||||| ||  ||| |||||||||    
T  2786729 gcttgtgaggtgcgtgagttaagtctcgttgcgcgacttaact 2786687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 16100942 - 16100835
Alignment:
Q  130 caccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtg 229  Q
    ||||||||| | |||||||||||||||||||| |||| | ||||||||||||||||||||||||   ||||||||||||  ||||||| ||||  || ||    
T  16100942 caccggccaacttgcgtgagttaactcgcgcacaggcaaatggtgcgtgacttaagtcacgcaggacttataaggtgcgtgagttaagccacgtcgcatg 16100843  T
Q  230 acttaact 237  Q
    ||||||||    
T  16100842 acttaact 16100835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 12144143 - 12144001
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | | ||| | ||| | ||||  |||||||||| |||||||| |||||||||||||||||||||||||| |    
T  12144143 accgtccaagaaacgtttgtgcttcagtttttaacactgaccaacttgcgcaagttaactcgtgcataggctcagtggtgcgtgacttaagtcacgcaaa 12144044  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | |||||||  ||||||||| ||| |||||||||||||    
T  12144043 gcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaact 12144001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 18172125 - 18172267
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | ||||||| ||| | ||||  |||||||||||||||| || ||||||||||||||||||||||||||||    
T  18172125 accgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcgcgcataagctcagtggtgcgtgacttaagtcacgcaga 18172224  T
Q  195 ggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    | || | | |||||   ||||||| || | |||||||||||||    
T  18172225 gcttgtgatgtgcgtgtgttaagtgacactgcgtgacttaact 18172267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 40033990 - 40034134
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctg-accaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgca 192  Q
    ||||||||||||||| ||||||||||| || |  ||||||| ||| | |||| ||||||||||||| | |||| ||||||||||||||||||||| ||||    
T  40033990 caccgtccaaaaaacatttgttcttcagttttttaccaccgaccaacttgcgcgagttaactcgcgtagaggctcagtggtgcgtgacttaagtctcgca 40034089  T
Q  193 gaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |   || ||||||||   ||||||||||||  |||||||||||||    
T  40034090 gtaattgtaaggtgcatgagttaagtcacgatgcgtgacttaact 40034134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 20202605 - 20202728
Alignment:
Q  101 ccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttat 200  Q
    |||||||| || ||||||| |  || |||||| ||||| | |||| ||||||||||||||  |||||||||||| |||||| |||||||||||| | |||    
T  20202605 ccaaaaaatgtgtgttcttgagctcagaccactggccaacctgcgcgagttaactcgcgcccaggccagtggtgtgtgactcaagtcacgcaga-gctat 20202703  T
Q  201 aaggtgcgcaagttaagtcacgcag 225  Q
    ||| ||||  |||||||||||||||    
T  20202704 aagatgcgtgagttaagtcacgcag 20202728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 34954145 - 34954022
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| ||||| || | |||||| |||| | || |  ||||||||||||||||||| |||||||||  ||||||||||||||| |    
T  34954145 accgtccaagaaacgtttgtgcttcagtttttaccaccagccaacttgtgcaagttaactcgcgcataggctcagtggtgcacgacttaagtcacgcata 34954046  T
Q  195 ggttataaggtgcgcaagttaagt 218  Q
    | || | ||||||||| |||||||    
T  34954045 gattgtgaggtgcgcatgttaagt 34954022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 7662194 - 7662291
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgca 192  Q
    ||||| ||| |||||||||| ||||| || | ||||||||||| | ||||  |||||| |||||||||||| |||||||||||||||||| |||||||    
T  7662194 accgttcaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaaatcgcgcataggctcagtggtgcgtgacttaactcacgca 7662291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 10399254 - 10399343
Alignment:
Q  95 caccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaa 184  Q
    |||| ||||||||| |||||||||||| || ||||||||||| | ||||| |||||||||||||||| | || |||||| | ||||||||    
T  10399254 caccatccaaaaaatgtttgttcttcagttttgaccaccggcaaacgtgcatgagttaactcgcgcacaagctagtggtacatgacttaa 10399343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 40017140 - 40017205
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctg 127  Q
    |||||||||||||||||| |||||||| |||| ||| | ||||||||||||||||||||| |||||    
T  40017140 aaaaacgtgtggattgaatgttgaaaaactgaccacagaccaaaaaacgtttgttcttcagttctg 40017205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 43147422 - 43147542
Alignment:
Q  102 caaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttat 200  Q
    |||||||  |||||| |||| || | ||||||||||| | |||| ||||||||||| | | |||| ||||||||||||||||||||||||||||| || |    
T  43147422 caaaaaatatttgtttttcagtttttaccaccggccaacttgcgcgagttaactcgtgtagaggctcagtggtgcgtgacttaagtcacgcagagtttgt 43147521  T
Q  201 aaggtgcgcaagttaagtcac 221  Q
     || ||||  |||||||||||    
T  43147522 gagatgcgttagttaagtcac 43147542  T

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Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 2599891 - 2599801
Alignment:
Q  100 tccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacg 190  Q
    |||||||||||| ||||||| | ||| |||||||| | | | ||||||||||||| ||||||  ||  |||||||||||||||||||||||    
T  2599891 tccaaaaaacgtgtgttcttgagttcagaccaccgacaaacctgcgtgagttaacacgcgcaccggttagtggtgcgtgacttaagtcacg 2599801  T

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Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 191
Target Start/End: Complemental strand, 19044016 - 19043886
Alignment:
Q  61 aaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgc 160  Q
    ||||||||||| || | ||||||||||| |||| |||||| ||||||||   ||||||| |  |  ||||||| |||| | ||| |||||||||||||||    
T  19044016 aaaaaacgtgtagaatcaaggttgaaaaactgaccaccgttcaaaaaacacgtgttcttgagcttagaccaccagccaacctgcatgagttaactcgcgc 19043917  T
Q  161 ataggccagtggtgcgtgacttaagtcacgc 191  Q
      | | || ||||| ||||||||||||||||    
T  19043916 ccaagtcaatggtgtgtgacttaagtcacgc 19043886  T

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Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 3461371 - 3461463
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactc 156  Q
    ||||| ||||||||| || |||||| | |||| ||| | ||||||||||||||||||| | |||||  ||||||||| |  ||||||||||||||    
T  3461371 aaaaatgtgtggattaaatgttgaagaactgaccacagaccaaaaaacgtttgttctttagttctg--caccggccaactggcgtgagttaactc 3461463  T

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Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 19401933 - 19401898
Alignment:
Q  206 gcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||||||||||||| ||||||||||||||||||    
T  19401933 gcgcaagttaagtcacgtagcgtgacttaacttgcg 19401898  T

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Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 1974446 - 1974388
Alignment:
Q  62 aaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttc 120  Q
    |||||||||||||| ||| |||||||| |||| ||| | ||||||||| ||||||||||    
T  1974446 aaaaacgtgtggatagaatgttgaaaaactgaccacagaccaaaaaacttttgttcttc 1974388  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 2740562 - 2740598
Alignment:
Q  205 tgcgcaagttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  2740562 tgcgcaagttaagtcacgcagtgtgtcttaacttgcg 2740598  T

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Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 3461513 - 3461481
Alignment:
Q  210 aagttaagtcacgcagcgtgacttaacttgcgt 242  Q
    ||||||||||||| |||||||||||||||||||    
T  3461513 aagttaagtcacgtagcgtgacttaacttgcgt 3461481  T

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Target: scaffold0217 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 59 - 237
Target Start/End: Complemental strand, 25732 - 25553
Alignment:
Q  59 gtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgc 158  Q
    ||||||||| |||  |||||| ||||||||||||||||  ||  ||||||||||||||||||| |||||||||||||||| | |||||||||||||||||    
T  25732 gtaaaaaacatgtaaattgaatgttgaaaacctgatcaaagtgaaaaaaacgtttgttcttcagttctgaccaccggccaacttgcgtgagttaactcgc 25633  T
Q  159 gcataggc-cagtggtgcgtgacttaagtcacgcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    ||| ||||   ||||| |||| ||||||||||||| || |||||||||| |  | |||| ||||||||||||||||||||    
T  25632 gcaaaggctgggtggtacgtgccttaagtcacgcatagattataaggtgtgtgaattaaatcacgcagcgtgacttaact 25553  T

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Target: scaffold0753 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 103 - 234
Target Start/End: Complemental strand, 4088 - 3956
Alignment:
Q  103 aaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcagaggttata 201  Q
    ||||||||||||||||||| ||||||||||||| || | |||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||    
T  4088 aaaaaacgtttgttcttcagttctgaccaccggtcaacttgcgtgagttaactcgcggaaaggctcagtggtgcgtgacttaagtcacgcagagattata 3989  T
Q  202 aggtgcgcaagttaagtcacgcagcgtgactta 234  Q
    || || |  |||| ||| ||||| |||||||||    
T  3988 agatgtgtgagtttagttacgcatcgtgactta 3956  T

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Target: scaffold0861 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 3721 - 3857
Alignment:
Q  101 ccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcagaggttat 200  Q
    ||||||||||||||||||| |  | |||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||  || || ||||    
T  3721 ccaaaaaacgtttgttctttagctttgaccaccggccaaggtgcgtgagttaactcgcgcataggccagtggtgtgtgacttaagtcagacaaagcttat 3820  T
Q  201 aaggtgcgcaagttaagtcacgcagcgtgacttaact 237  Q
    |||||| |  || |||||||||  || ||||||||||    
T  3821 aaggtgtgttagctaagtcacgttgcatgacttaact 3857  T

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Target: scaffold0223 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 190
Target Start/End: Original strand, 16026 - 16168
Alignment:
Q  49 tgtaaaggttgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgacc-accggccagcgtgcgtg 147  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||  |  ||||||||||||| |||| || |  ||||||| |||||||| | ||||||    
T  16026 tgtaaaggttgtaaaaaatgtgtagattgaaggttgaaaagctgactaaagtccaaaaaacgtgtgtttttgagctctgaccaaccggccaacctgcgtg 16125  T
Q  148 agttaactcgcgcataggccagtggtgcgtgacttaagtcacg 190  Q
    ||||||| |||||| |||||| ||| |||||||||||||||||    
T  16126 agttaacacgcgcacaggccactggagcgtgacttaagtcacg 16168  T

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Target: scaffold0051 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 20190 - 20060
Alignment:
Q  96 accgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcaga 194  Q
    ||||||||| |||||||||| |||||||| | ||||||||||| | ||||  ||||||||||||||||||| |||||||||||||||||||||||||| |    
T  20190 accgtccaagaaacgtttgtgcttcaatttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcaaa 20091  T
Q  195 ggttataaggtgcgcaagttaagtcacgcag 225  Q
    | || | |||||||  |||||| ||||||||    
T  20090 gcttgtgaggtgcgtgagttaactcacgcag 20060  T

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Target: scaffold1455 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 158 - 258
Alignment:
Q  58 tgtaaaaaacgtgtggattgaaggttgaaaacctgatcaccgtccaaaaaacgtttgttcttcaattctgaccaccggccagcgtgcgtgagttaactcg 157  Q
    ||||||||||||||| |||||| |||||||| |||| ||| | | ||||||||||||||||||| |||||  ||||||||| |  | |||||||||||||    
T  158 tgtaaaaaacgtgtgaattgaatgttgaaaaactgaccacagactaaaaaacgtttgttcttcagttctg--caccggccaactagtgtgagttaactcg 255  T
Q  158 cgc 160  Q
    |||    
T  256 cgc 258  T

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Target: scaffold1212 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 1801 - 1830
Alignment:
Q  212 gttaagtcacgcagcgtgacttaacttgcg 241  Q
    ||||||||||||||||||||||||||||||    
T  1801 gttaagtcacgcagcgtgacttaacttgcg 1830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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