View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_36 (Length: 404)
Name: NF20179_high_36
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 32304663 - 32305039
Alignment:
| Q |
19 |
gtttatgtattgtgacatgaccgtgaaaactagatattttggtcttgggccgtcatatactcttaaaaaccacctttcctttcaagaagcattcgtgctt |
118 |
Q |
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| T |
32304663 |
gtttatgcattgtgaaatgaccgcgaaaactagatattttggtcttgggccgtcatatactcttaaaaaccacctttccttttaagaagcattcgtgctt |
32304762 |
T |
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| Q |
119 |
agtgggttgtgaaccgatgtatactcttaaaactatttcgtctttgtttgggaggttgtggatcatcatatcc-ttaaaaatacttcgcctttaaacaga |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32304763 |
agtgggttgtggaccgatgtatactcttaaaactatttcgtctttgtttgggaggttgtggatcatcatatcccttaaaaatacttcgcctttaaacaga |
32304862 |
T |
|
| Q |
218 |
actcgtgcttcatttatgtcaaggacaaatatggaggtcaaagttccacgagaccggctagtgggcgcccatatatcgtaaaccaaacagataggcctta |
317 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32304863 |
actcgtgcttcgtttatgtcaaggacaaatatggaggtcaaagttccacgagaccggctagtgggcgcccatatatcgtaaaccaaacagataggcctta |
32304962 |
T |
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| Q |
318 |
cacgtcattgttacactaaaagagtcttggatcatttcagatcccactaaaagtcaaaaacattataagagtctctg |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32304963 |
cacgtcattgttacactaaaagagtcttggatcatttcagatcccactaaaagtcaaaaacattataagagtctctg |
32305039 |
T |
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