View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_37 (Length: 397)
Name: NF20179_high_37
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 64 - 380
Target Start/End: Complemental strand, 15275860 - 15275555
Alignment:
| Q |
64 |
ggcatcatcttatgcaagaatgatgaacatcgcaagacataatgccattccaataaaaaggccatcattctttatcacatttgttgtcacctgagcataa |
163 |
Q |
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| T |
15275860 |
ggcatcatcttatgcaagaatgatgaacatcgcaagacataaagccattccaataaaaaggccatcattctttatcacatttgttgtcacctgagcataa |
15275761 |
T |
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| Q |
164 |
aaa-cgatcaccgaatttgtaggagaggtttaaggtacccttggatttccgagagcgttttttcctaacctgataactgagttggaaaccggcattggca |
262 |
Q |
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| T |
15275760 |
aaaacgatcaccaaatttgtaggagaggtttaaggtacccttggatttccgagagcgttttttcctaacctgataactgagttggaaaccggcattggca |
15275661 |
T |
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| Q |
263 |
gggttatcaagaagtcccttgagagggatacggaccttgccaatggtactgcatgggaggaattttgggaggaattttcgataggagatgagtttgactt |
362 |
Q |
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| T |
15275660 |
gggttatcaagaagtcccttgagagggatacggaccttgccaatggtactgcatgggaggaa------------ttttcgataggagatgagtttgactt |
15275573 |
T |
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| Q |
363 |
caagagagagacgattat |
380 |
Q |
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| T |
15275572 |
caagagagagacgattat |
15275555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 328
Target Start/End: Complemental strand, 15264112 - 15263960
Alignment:
| Q |
176 |
aatttgtaggagaggtttaaggtacccttggatttccgagagcgttttttcctaacctgataactgagttggaaaccggcattggcagggttatcaagaa |
275 |
Q |
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| T |
15264112 |
aatttgtaagagaggtttatggtacccttggatttcccagagcgttttttcctaacttgataactgaatggatgaccggcataggcagagttatcaagaa |
15264013 |
T |
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| Q |
276 |
gtcccttgagagggatacggaccttgccaatggtactgcatgggaggaatttt |
328 |
Q |
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| T |
15264012 |
gtcccaagagagggatacggaccttgccaatggtactgcgtgggaggaatttt |
15263960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 292
Target Start/End: Original strand, 27155665 - 27155791
Alignment:
| Q |
166 |
acgatcaccgaatttgtaggagaggtttaaggtacccttggatttccgagagcgttttttcctaacctgataactgagttggaaaccggcattggcaggg |
265 |
Q |
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||||||||| ||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||||||| |||||||||||| || ||| |||||| |
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| T |
27155665 |
acgatcaccaaatttgtaggagaggtttaagctacccctggatttgtgagagggttttttcctaacctggtaactgagttggtggccagcagcagcaggg |
27155764 |
T |
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| Q |
266 |
ttatcaagaagtcccttgagagggata |
292 |
Q |
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| T |
27155765 |
ttatcaagaagttccttgagagggata |
27155791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 15263972 - 15263919
Alignment:
| Q |
328 |
tgggaggaattttcgataggagatgagtttgacttcaagagagagacgattatg |
381 |
Q |
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||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| |
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| T |
15263972 |
tgggaggaattttcgataggaaatgagtttgatttcgagagagagacgattatg |
15263919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 12835802 - 12835921
Alignment:
| Q |
167 |
cgatcaccgaatttgtaggagaggtttaaggtacccttggatttccgagagcgttttttcctaacctgataactgagttggaaaccggcattggcagggt |
266 |
Q |
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| T |
12835802 |
cgatcaccgagtttgtaggagaggttcaaggtccctctggatttctctgagtttattttcctaacctgataactgagttggtggcc------ggcagggt |
12835895 |
T |
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| Q |
267 |
tatcaagaagtcccttgagagggata |
292 |
Q |
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|||||| |||| |||||||||||||| |
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| T |
12835896 |
tatcaaaaagttccttgagagggata |
12835921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 15251615 - 15251579
Alignment:
| Q |
168 |
gatcaccgaatttgtaggagaggtttaaggtaccctt |
204 |
Q |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
15251615 |
gatcaccaaatttgtaggagaggtttaaggtaccctt |
15251579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 15251464 - 15251420
Alignment:
| Q |
328 |
tgggaggaattttcgataggagatgagtttgacttcaagagagag |
372 |
Q |
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| T |
15251464 |
tgggaggaattttcgacgggagaggagtttgacttcgagagagag |
15251420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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