View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_40 (Length: 380)
Name: NF20179_high_40
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_40 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 35429746 - 35430117
Alignment:
| Q |
13 |
agagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttg |
112 |
Q |
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| T |
35429746 |
agagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttg |
35429845 |
T |
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| Q |
113 |
tgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgcttcgtctgtattattgtggtgagagccactgattctagttattctttggctct |
212 |
Q |
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| T |
35429846 |
tgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctttgtctgtattattgtggtgagagccactgattctagttattctttggctct |
35429945 |
T |
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| Q |
213 |
tttttgtttgtatttttctgcaatcgcacttcttgttgattnnnnnnnnnnt-tcgcgtattaaaata---agttataaagttcttattcttgttannnn |
308 |
Q |
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| T |
35429946 |
tttttgtttgtatttttctgcaatcgcacttcttgttgattaaaaaaaaaatatcgcgtattaaaataattagttataaagttcttattcttgttatttt |
35430045 |
T |
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| Q |
309 |
nnnaactcaaatttccatgctttaaaattgttcaattatgttacttttttccctgtatagattatctgaatt |
380 |
Q |
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| T |
35430046 |
tttaactcaaatttccatgctttaaaattgttcaattatgttacttttttccctgtatagattatctgaatt |
35430117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 35420607 - 35420845
Alignment:
| Q |
13 |
agagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35420607 |
agagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttg |
35420706 |
T |
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| Q |
113 |
tgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgcttcgtctgtattattgtggtgagagccactgattctagttattctttggctct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420707 |
tgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctttgtctgtattattgtggtgagagccactgattctagttattctttggctct |
35420806 |
T |
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| Q |
213 |
tttttgtttgtatttttctgcaatcgcacttcttgttga |
251 |
Q |
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| T |
35420807 |
tttttgtttgtatgtttctgcaatcgcacttcttgttga |
35420845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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