View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_48 (Length: 349)
Name: NF20179_high_48
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 330
Target Start/End: Complemental strand, 38793185 - 38792875
Alignment:
| Q |
22 |
atttaaataatttgattaatctaagtgtactcaggaaatatcaattctttcaaacgatttttctgttgcattacatgctttcagtactcatacaaaccaa |
121 |
Q |
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| T |
38793185 |
atttaaataatttgattaatctaagtgtactcaggaaatatcaattctttcaaatgtttgtt-tgttgtattacatgttttcagtactcatacaaaccaa |
38793087 |
T |
|
| Q |
122 |
gcatactagcagagaaaaaggggcacagatacatagaaaagtgaagcaagtatgtacaagtt-ccaggtaaaacgcgaagaccggtttccttcgcctctg |
220 |
Q |
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| T |
38793086 |
tcatactagcagagaaaaagaggctcaggtgcatagaaaagtgaagcaagtatgtacaagttcccatgtaaaacgtgaagactgatttcctttgccgctc |
38792987 |
T |
|
| Q |
221 |
cgtaac--atcactgatattacgtcaaaaccacgccgaagggcagactatgacagaactgaatttgaattcagtgcagtcggtgactgtacagtcatgta |
318 |
Q |
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|||| | || |||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| | ||||||| |
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| T |
38792986 |
cgtagcttattactgatattatgtcaaaaccatgccgaagggcagactgtgatagaactgaatttgaattcagtgcagtaggtgactgtataatcatgta |
38792887 |
T |
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| Q |
319 |
atcagacaatcc |
330 |
Q |
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||||||||||| |
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| T |
38792886 |
gtcagacaatcc |
38792875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 29780421 - 29780355
Alignment:
| Q |
144 |
gcacagatacatagaaaagtgaagcaagtatgta-caagttccaggtaaaacgcgaagaccggtttc |
209 |
Q |
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||||| ||||||||| ||||||||||||| || ||||||||| |||||||| ||||||||||||| |
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| T |
29780421 |
gcacatatacatagacaagtgaagcaagtccctaacaagttccaagtaaaacgtgaagaccggtttc |
29780355 |
T |
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