View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_49 (Length: 347)
Name: NF20179_high_49
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 24697604 - 24697924
Alignment:
| Q |
12 |
agtgagatgaacataaattggagagtaaatatcaattgcagaggcaaaagcttcaaattctaatttcaagttagaatcaaatcaattctactcgtaagca |
111 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24697604 |
agtgagttgaacataaattggagactaaatatcaattgcagaggcaaaagcttcaaattctaatttcaagttagaatcaaaccaattctactcgtaagca |
24697703 |
T |
|
| Q |
112 |
tctaaatatttcaaaaccaattctacatctctagaactaaatttgcattcaaacattttctgctacagatgattgtaagatgtcagttgatacaccaaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24697704 |
tctaaatatttcaaaaccaattctacatctctagaactaaatttgcattcaaacattttctgctacagatgattgtaagatgtcagttgatacaccaaat |
24697803 |
T |
|
| Q |
212 |
catcaagcaaccttatcactgcaatcaccatttgctgccgagccacttaatcgatttgagctaggttttaaccagtctatggtaaatcttcttattaaag |
311 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24697804 |
catcaagcaaccttatccctgcaatcaccatttgctgccgagccacttaatcgatttgagctaggttttaaccagtctatggtaaatcttcttattaaag |
24697903 |
T |
|
| Q |
312 |
caatccctttgatcatgtttt |
332 |
Q |
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||||||||||||||||||||| |
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| T |
24697904 |
caatccctttgatcatgtttt |
24697924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 41517041 - 41516987
Alignment:
| Q |
37 |
taaatatcaattgcagaggcaaaagcttcaaattctaatttcaagttagaatcaa |
91 |
Q |
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| T |
41517041 |
taaaaatcaattgaagaggcaaaaactccaaattctaacttcaagttagaatcaa |
41516987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 36413809 - 36413754
Alignment:
| Q |
37 |
taaatatcaattgcagaggcaaaagcttcaaattctaatttcaagttagaatcaaa |
92 |
Q |
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|||| |||||| | |||| ||||| ||||||||||||| ||||||||||||||||| |
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| T |
36413809 |
taaaaatcaatcgtagagccaaaaacttcaaattctaacttcaagttagaatcaaa |
36413754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 37561485 - 37561440
Alignment:
| Q |
43 |
tcaattgcagaggcaaaagcttcaaattctaatttcaagttagaat |
88 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
37561485 |
tcaattgtagaggcaaaagcttcaaattctaatttcaagtcagaat |
37561440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 1099824 - 1099767
Alignment:
| Q |
90 |
aaatcaattctactcgtaagcatctaaatatttcaaaaccaattctacatctctagaa |
147 |
Q |
| |
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||||||||||| |||| |||| | ||||||||||||| ||||||| ||||||||||| |
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| T |
1099824 |
aaatcaattctgctcgagagcaaccaaatatttcaaaatcaattctgcatctctagaa |
1099767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 9051143 - 9051094
Alignment:
| Q |
38 |
aaatatcaattgcagaggcaaaagcttcaaattctaatttcaagttagaa |
87 |
Q |
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|||||||||||| ||||||||| || ||||||||| ||||||||||||| |
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| T |
9051143 |
aaatatcaattgttgaggcaaaaactccaaattctagtttcaagttagaa |
9051094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 3043102 - 3043158
Alignment:
| Q |
91 |
aatcaattctactcgtaagcatctaaatatttcaaaaccaattctacatctctagaa |
147 |
Q |
| |
|
||||||||||| || |||||| ||||| || |||||| |||||||||| |||||||| |
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| T |
3043102 |
aatcaattctattcttaagcaactaaacatgtcaaaatcaattctacacctctagaa |
3043158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 7328685 - 7328725
Alignment:
| Q |
51 |
agaggcaaaagcttcaaattctaatttcaagttagaatcaa |
91 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
7328685 |
agaggcaaaagtttcaaattctagcttcaagttagaatcaa |
7328725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 6767722 - 6767674
Alignment:
| Q |
43 |
tcaattgcagaggcaaaagcttcaaattctaatttcaagttagaatcaa |
91 |
Q |
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||||||| ||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
6767722 |
tcaattgtagaagcaaaagctccaaattctagcttcaagttagaatcaa |
6767674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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