View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_52 (Length: 333)
Name: NF20179_high_52
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 46325693 - 46325364
Alignment:
| Q |
10 |
agtgagaagaattattttataaatgaacataaccaattatatttgacaagtgatcatacgtattagaatcaattctacacatcca--------------- |
94 |
Q |
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| T |
46325693 |
agtgagaagaattgttttataaatgaacataaccaattatatttgacaagtgatcatacatatcaaaatcaattctacacatccaaaattaaatttggtt |
46325594 |
T |
|
| Q |
95 |
------gaagtgaaaccaaacatacaccttatccctaatttttgaaatttgatttaataaagtaaactgatttgcatagattttgttgaagtagcttaat |
188 |
Q |
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| T |
46325593 |
tctctagaagtgaaaccaaacatacaccttatccctaatttttgaaatttgatgtaataaagtaaactgatttgcatagattttgttgaagtagcttaat |
46325494 |
T |
|
| Q |
189 |
taaatgtgatggcattgaaataaagttattgtgcaaataaaagaatataaaaaggcctccttattttcgttcctttctt---tatcaagtttgagaagaa |
285 |
Q |
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| T |
46325493 |
taaatgtgatggcattgaaataaagttattgtgcaaataaaagaatataaaaaggcctccttattttcgttcttttctttactatcaagtttgagaagaa |
46325394 |
T |
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| Q |
286 |
tcaatattgtttgttgctactgcaaataac |
315 |
Q |
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| T |
46325393 |
tcaatattgtttgttgctactgcaaataac |
46325364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 191
Target Start/End: Original strand, 521906 - 521937
Alignment:
| Q |
160 |
ttgcatagattttgttgaagtagcttaattaa |
191 |
Q |
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| T |
521906 |
ttgcatagattttgttgaagtagcttaattaa |
521937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 32977313 - 32977345
Alignment:
| Q |
160 |
ttgcatagattttgttgaagtagcttaattaaa |
192 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
32977313 |
ttgcatagattttgttgaagtagcttaagtaaa |
32977345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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