View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_high_53 (Length: 331)
Name: NF20179_high_53
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_53 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 1857606 - 1857310
Alignment:
| Q |
20 |
atcaccaggttcataaaggctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatcgttgatccaagagtgcttattcattaac |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1857606 |
atcaccaggttcataaatgctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaac |
1857507 |
T |
|
| Q |
120 |
ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccatgatct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
1857506 |
ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatct |
1857407 |
T |
|
| Q |
220 |
cttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagacttcttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
1857406 |
cttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagacttcttct |
1857310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 1843595 - 1843295
Alignment:
| Q |
20 |
atcaccaggttcataaaggctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatcgttgatccaagagtgcttattcattaac |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1843595 |
atcaccaggttcataaatgctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaac |
1843496 |
T |
|
| Q |
120 |
ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccatgatct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
1843495 |
ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatct |
1843396 |
T |
|
| Q |
220 |
cttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagacttcttctctc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || || | ||| ||||||||||||||||| |
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|
| T |
1843395 |
cttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcttttttcaatcaagatagtaaattcattgcaagacttcttctctc |
1843296 |
T |
|
| Q |
320 |
t |
320 |
Q |
| |
|
| |
|
|
| T |
1843295 |
t |
1843295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 1869204 - 1868908
Alignment:
| Q |
20 |
atcaccaggttcataaaggctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatcgttgatccaagagtgcttattcattaac |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1869204 |
atcaccaggttcataaaagctagatgatgattcatgaagcaagaaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaac |
1869105 |
T |
|
| Q |
120 |
ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccatgatct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
1869104 |
ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatct |
1869005 |
T |
|
| Q |
220 |
cttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagacttcttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| || || ||||| |||||||||||||| |
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|
| T |
1869004 |
cttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcttttttcaatcaagatagtaaatgcattgcaagacttcttct |
1868908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 1815437 - 1815738
Alignment:
| Q |
20 |
atcaccaggttcataaaggctagatgatgattcatgaagcaagtacct-actctcctctacatttgagtcatcgttgatccaagagtgcttattcattaa |
118 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||||| |||||| |
|
|
| T |
1815437 |
atcaccaaattcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcattgatccaagagtgcttatccattaa |
1815536 |
T |
|
| Q |
119 |
cctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccatgatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1815537 |
cctcattccctccaattccatagccacttccttcatgcttggtctttcctcccctataagtctcaaacagttcgccgcaagaacagccacctccatgatc |
1815636 |
T |
|
| Q |
219 |
tcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagacttcttctct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
1815637 |
acttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttctct |
1815736 |
T |
|
| Q |
319 |
ct |
320 |
Q |
| |
|
|| |
|
|
| T |
1815737 |
ct |
1815738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 310
Target Start/End: Original strand, 9161353 - 9161550
Alignment:
| Q |
113 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
212 |
Q |
| |
|
||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||||| |||||||||||| | || ||||||| ||| |||||| |
|
|
| T |
9161353 |
cattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaacaccttgctgcaagaatagcaacctcc |
9161452 |
T |
|
| Q |
213 |
atgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagact |
310 |
Q |
| |
|
| ||||| | |||||||| ||||| | | |||| |||||||| ||||||| | |||| | ||| || ||||||| |||||||||||||||||| |
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|
| T |
9161453 |
ttaatctcctccttgttttcatcatttaaaataccaacttgaatagcttcaaaaattctatcttgttttaaacaagacaaaaagtgcatagcaagact |
9161550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 310
Target Start/End: Original strand, 9170179 - 9170376
Alignment:
| Q |
113 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
212 |
Q |
| |
|
||||||||| || || ||||| ||||| |||||||||||||| | |||||||| |||||||||||||| |||||| | | ||||||| ||| |||||| |
|
|
| T |
9170179 |
cattaaccttatgccatccaactccattgccacttccttcatacaaggtctttcatcccctctaagtcttaaacaccttgaagcaagaatagcaacctcc |
9170278 |
T |
|
| Q |
213 |
atgatctcttgtttgttttcttcattccacaaa-ccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagact |
310 |
Q |
| |
|
| ||||||| ||||| || || || |||||| ||| |||||||| ||||||| | ||||| | ||| || ||||||| |||||||||||||||||| |
|
|
| T |
9170279 |
ttaatctctttcttgttatcatcgtt-cacaaatccaacttgaatagcttcaaaaaatttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9170376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 310
Target Start/End: Original strand, 9199746 - 9199943
Alignment:
| Q |
113 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
212 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||| ||| |||||| |
|
|
| T |
9199746 |
cattaaccttataccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagcaacctcc |
9199845 |
T |
|
| Q |
213 |
atgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagact |
310 |
Q |
| |
|
| ||||||| |||||||| |||| | | | ||| |||||||| | ||||| | ||||| | ||| || ||||||| |||||||||||||||||| |
|
|
| T |
9199846 |
ttaatctctttcttgttttcatcatccaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9199943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 310
Target Start/End: Complemental strand, 9119097 - 9118902
Alignment:
| Q |
115 |
ttaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccat |
214 |
Q |
| |
|
||||||| || || ||||| |||||||| | ||||||||| || |||||||| || |||| ||||||||||||| | || ||||||| ||| |||||| | |
|
|
| T |
9119097 |
ttaaccttataccatccaactccatagctatttccttcatactaggtctttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctcctt |
9118998 |
T |
|
| Q |
215 |
gatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagact |
310 |
Q |
| |
|
||||||| ||||| || |||||| | | ||| |||||||| ||||||| | ||||| | ||| || ||||||| ||||||||||||||||| |
|
|
| T |
9118997 |
aatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagact |
9118902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 310
Target Start/End: Original strand, 9218262 - 9218459
Alignment:
| Q |
113 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
212 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||| || |||||| |
|
|
| T |
9218262 |
cattaaccttatgccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagaaacctcc |
9218361 |
T |
|
| Q |
213 |
atgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagact |
310 |
Q |
| |
|
| ||||||| |||||||| ||||| | | ||| |||||||| | ||||| | ||||| | ||| || ||||||| |||||||||||||||||| |
|
|
| T |
9218362 |
ttaatctctttcttgttttcatcattgaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9218459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 9229131 - 9229304
Alignment:
| Q |
97 |
tccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgc |
196 |
Q |
| |
|
|||||| |||||| | ||||||||| | ||||| | |||||||||||||| |||||||| |||||||| || ||| |||||||||| ||| | || || |
|
|
| T |
9229131 |
tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttcctcgcctttaagtctcaagcaccttgcagc |
9229230 |
T |
|
| Q |
197 |
aagaacagccacctccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacat |
270 |
Q |
| |
|
||||| ||| || ||| | ||||| | ||||| || |||||| | | |||| |||||| ||||||| |||||| |
|
|
| T |
9229231 |
aagaatagcaacttccttaatctcctccttgttctcatcattcaaaataccaacttgaagaacttcagacacat |
9229304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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