View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_54 (Length: 326)
Name: NF20179_high_54
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 117 - 308
Target Start/End: Original strand, 40950963 - 40951154
Alignment:
| Q |
117 |
gatgaacatatgacaacacgttaaaaatcattttattccgaaatttaatcattctacgtaagtataaaactgttagggactatatacttaatattatcat |
216 |
Q |
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| T |
40950963 |
gatgaacatttgacaacacgttaaaaatcattttattcctaaatttaattattctacgtaagtataaaactgttagggactatatacttaatattatcat |
40951062 |
T |
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| Q |
217 |
atagtggttaggtnnnnnnngttttgatcacagtatgataacttacaacttcagattaatgtatgttaaatatactttgatttctgtcacat |
308 |
Q |
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| T |
40951063 |
atagtggttaggtaaaaaaaaatttgatcacagtacgataacttacaacttcagattaatatatgttaaatatactttgattaccgtcacat |
40951154 |
T |
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Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 117 - 298
Target Start/End: Original strand, 26959695 - 26959876
Alignment:
| Q |
117 |
gatgaacatatgacaacacgttaaaaatcattttattccgaaatttaatcattctacgtaagtataaaactgttagggactatatacttaatattatcat |
216 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26959695 |
gatgaacatttgacaacacgttaaaaatcattttattcctaaatttaataattctacgtaagtataaaactgttagggactatatacttaatattatcat |
26959794 |
T |
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| Q |
217 |
atagtggttaggtnnnnnnngttttgatcacagtatgataacttacaacttcagattaatgtatgttaaatatactttgatt |
298 |
Q |
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| T |
26959795 |
atagtggttaggtaaaaaaaaatttgatcacagtacgataacttacaacttcagattaatatatgttaaatatactttgatt |
26959876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 117 - 309
Target Start/End: Complemental strand, 51387878 - 51387686
Alignment:
| Q |
117 |
gatgaacatatgacaacacgttaaaaatcattttattccgaaatttaatcattctacgtaagtataaaactgttagggactatatacttaatattatcat |
216 |
Q |
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||||||||| ||| || |||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51387878 |
gatgaacatctgataaaacgttaaaaatcattttattcctaaattaaatcattctacataagtttaaaactgttagggactatatacttaatattatcat |
51387779 |
T |
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| Q |
217 |
atagtggttaggtnnnnnnngttttgatcacagtatgataacttacaacttcag-attaatgtatgttaaatatactttgatttctgtcacata |
309 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||| |
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| T |
51387778 |
atagtggttaggtaaaaaaagttttgatcacagaatgataacttacaactttagtattaatgtatgtt-aatatactttgattagtgtcacata |
51387686 |
T |
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