View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_55 (Length: 323)
Name: NF20179_high_55
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_55 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 35991096 - 35991403
Alignment:
| Q |
1 |
ctttcttagggtcaaaatttccaaatccctcagcaacaatatagaaatcatatccatgaagatgaatagggtgattctcaggagtaacaatactagtatc |
100 |
Q |
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| T |
35991096 |
ctttcttagggtcaaaatttccaaatccctcggcaacaatatagaaatcatatccatgaagatgaatagggtgattctcaggagtaacaatactagtatc |
35991195 |
T |
|
| Q |
101 |
ttgcaaaacaacctgaacccttgatccaaatctcaacttagtaactttagtcccttgaatcggttgccacaacgaacgacttacattaccggtgtaatca |
200 |
Q |
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| T |
35991196 |
ttgcaaaacaacctgaacccttgatccaaatctcaacttagtaactttagtcccttgaatcggttgccacaacgaccgactcacattaccggtgtaatca |
35991295 |
T |
|
| Q |
201 |
aattgcacgggaggttttgtgggaaaatccgtcgtaaaaacaccttgtactccaagtttatgagcctgcaggattgaaaaattgctaggaagtacaaaag |
300 |
Q |
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| T |
35991296 |
aattgcacgggaggttttgtgggaaaatccgtcgtaaaaacaccttgtactccaagtttatgagcctgcaggattgaaaaattgctaggaagtacaaaag |
35991395 |
T |
|
| Q |
301 |
acacattg |
308 |
Q |
| |
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|||||||| |
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| T |
35991396 |
acacattg |
35991403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 31164867 - 31164931
Alignment:
| Q |
54 |
ccatgaagatgaatagggtgattctcaggagtaacaatactagtatcttgcaaaacaacctgaac |
118 |
Q |
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| T |
31164867 |
ccatgaacatgcatagggtgatcctcaactgttacaatactagtatcctgcaaaacaatctgaac |
31164931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 32271886 - 32272126
Alignment:
| Q |
1 |
ctttcttagggtcaaaatttccaaatccctcagcaacaatatagaaatcatatccatgaagatgaatagggtgattctcaggagtaacaatactagtatc |
100 |
Q |
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||||||||| |||||||| ||||| || ||||||||||| || |||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
32271886 |
ctttcttagcatcaaaattaccaaacccttcagcaacaatgtaaaaatcatacccatgaaggtgaattgggtgattctcaggagtaacaatactggtatc |
32271985 |
T |
|
| Q |
101 |
ttgcaaaacaacctgaacccttgatccaaatctcaacttagtaa-ctttagtcccttgaatcggttgccacaacgaacgacttacattaccggtgtaatc |
199 |
Q |
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|||||| |||| || |||||||||||||| ||||||| |||| |||||||||| ||| |||||||| | ||||| || || || ||||||||||| |
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| T |
32271986 |
ttgcaacacaatttgcacccttgatccaaacttcaactt-gtaagctttagtcccgggaacaggttgccagagggaacggctcacgttgccggtgtaatc |
32272084 |
T |
|
| Q |
200 |
aaattgcacgggaggttttgtgggaaaatccgtcgtaaaaac |
241 |
Q |
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|||| ||||| ||||||| |||||||| || |||||||| |
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| T |
32272085 |
gaatttaacgggtggttttgctggaaaatcagtggtaaaaac |
32272126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 25093216 - 25093150
Alignment:
| Q |
43 |
agaaatcatatccatgaagatgaatagggtgattctcaggagtaacaatactagtatcttgcaaaac |
109 |
Q |
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|
| T |
25093216 |
agaaattaaatccatgaagatgaataggatgattctcaggtgttaacattccagtatcttgcaaaac |
25093150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 22603691 - 22603627
Alignment:
| Q |
45 |
aaatcatatccatgaagatgaatagggtgattctcaggagtaacaatactagtatcttgcaaaac |
109 |
Q |
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|||||||| ||||||||||| | ||||||| |||||| | || ||||||||||||||||||||| |
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| T |
22603691 |
aaatcataaccatgaagatgcaaagggtgactctcagcaccaagaatactagtatcttgcaaaac |
22603627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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