View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_58 (Length: 314)
Name: NF20179_high_58
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_58 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 18840479 - 18840775
Alignment:
| Q |
18 |
ttttacggtacaaatttcctttcctctcagattcttagtcttccggtctactatccttttcggtaaaacttcagaagaaatattatttttcggatgaatg |
117 |
Q |
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| T |
18840479 |
ttttacggtaccaatttcctttcctctcagattcttagtcttccggtctactatcctttttggtaaaacttcaaaagaaaaattatttttctgatgaatt |
18840578 |
T |
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| Q |
118 |
gcatccttctccactgcatcaacaagcacatatcttccgttcttagtacaaacaagttctccattcatgcaaagcttcctcagcttaagctgaagaatag |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18840579 |
gcatccttctccacggcatcaacaagcacatatcttccgttcttagtacaaacaagttctccattcatgcaaagcttcctcagcttaagctgaagaatag |
18840678 |
T |
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| Q |
218 |
tcgcatgcgcggttggtaaatcttcatattcccttctaatgaattcagagattgctgcctcagtcgagccacattcgtcattcaactccttgattgc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18840679 |
tcgcatgcgcggttggtaaatcttcatattcccttctaatgaattcagagattgctgcctcagtcgagccacattcgtcattcaactccttgattgc |
18840775 |
T |
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