View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_high_59 (Length: 313)

Name: NF20179_high_59
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_high_59
NF20179_high_59
[»] chr7 (13 HSPs)
chr7 (1-313)||(3619141-3619453)
chr7 (189-313)||(29102178-29102302)
chr7 (189-313)||(29116323-29116447)
chr7 (189-313)||(29073215-29073339)
chr7 (191-313)||(3617388-3617510)
chr7 (191-313)||(29071309-29071431)
chr7 (191-313)||(29058081-29058203)
chr7 (189-313)||(28956943-28957067)
chr7 (189-313)||(29068845-29068969)
chr7 (192-311)||(29078043-29078162)
chr7 (184-287)||(29110786-29110889)
chr7 (191-313)||(29066887-29067009)
chr7 (268-311)||(29098456-29098499)
[»] chr4 (3 HSPs)
chr4 (189-313)||(11849829-11849953)
chr4 (191-313)||(11851741-11851863)
chr4 (189-313)||(11854455-11854579)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 3619453 - 3619141
Alignment:
Q  1 ttatgtataagggtttatgtaatatttgtatcagagattgatataaacaccgtgtctgcttgcttgtgatttaagtttttagatgcattactgataaata 100  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3619453 ttatgtataatggtttatgcaatatttgtatcagagattgatataaacaccgtgtctgcttgcttgtgatttaagtttttagatgcattactgataaata 3619354  T
Q  101 tatatgatacgtagaagatgatacacaaataaacttaccaaaacaataagtatattacatgaaacaaatagtatttccataacatatgatatcaagcatc 200  Q
    |||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3619353 tatatgatacataaaagatgatatacaaataaacttaccaaaacaataagtatattacatgaaacaaatagtatttccataacatatgatatcaagcatc 3619254  T
Q  201 agaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3619253 agaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggt 3619154  T
Q  301 tggtaatcatgtt 313  Q
    |||||||||||||    
T  3619153 tggtaatcatgtt 3619141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 29102302 - 29102178
Alignment:
Q  189 atatcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttg 288  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29102302 atatcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 29102203  T
Q  289 ttacaaggaggttggtaatcatgtt 313  Q
    |||||||||||||| ||||||||||    
T  29102202 ttacaaggaggttgataatcatgtt 29102178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 29116447 - 29116323
Alignment:
Q  189 atatcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttg 288  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29116447 atatcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 29116348  T
Q  289 ttacaaggaggttggtaatcatgtt 313  Q
    |||||||||||||| ||||||||||    
T  29116347 ttacaaggaggttgataatcatgtt 29116323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 29073339 - 29073215
Alignment:
Q  189 atatcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttg 288  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29073339 atatcaagcatcggaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 29073240  T
Q  289 ttacaaggaggttggtaatcatgtt 313  Q
    |||||||||||||| ||||||||||    
T  29073239 ttacaaggaggttgataatcatgtt 29073215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 191 - 313
Target Start/End: Original strand, 3617388 - 3617510
Alignment:
Q  191 atcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgtt 290  Q
    |||||||||| |||||||||||||| |  |||||||||||||| ||||| ||| ||||||||||||||||||| ||||| |||||||| ||||||||       
T  3617388 atcaagcatctgaccatgtaatatctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttgg 3617487  T
Q  291 acaaggaggttggtaatcatgtt 313  Q
    |||||||||||||||||||||||    
T  3617488 acaaggaggttggtaatcatgtt 3617510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 313
Target Start/End: Original strand, 29071309 - 29071431
Alignment:
Q  191 atcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgtt 290  Q
    |||||||||| ||||||||||| || |  |||||||||||||| ||||| ||| ||||||||||||||||||| || || |||||||| ||||||||       
T  29071309 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 29071408  T
Q  291 acaaggaggttggtaatcatgtt 313  Q
    |||||||||||||||||||||||    
T  29071409 acaaggaggttggtaatcatgtt 29071431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 313
Target Start/End: Original strand, 29058081 - 29058203
Alignment:
Q  191 atcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgtt 290  Q
    |||||||||| ||||||||||| || |  |||||||||||||| ||||| ||| ||||||||||||||||||| || || |||||||| ||||||||       
T  29058081 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 29058180  T
Q  291 acaaggaggttggtaatcatgtt 313  Q
     ||||||||||| ||||||||||    
T  29058181 gcaaggaggttgataatcatgtt 29058203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 28957067 - 28956943
Alignment:
Q  189 atatcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttg 288  Q
    |||||||||||| ||||||||||| || |  |||||||||||||| ||||| ||| | || |||| ||||||||| || || |||||||| ||||||||     
T  28957067 atatcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacctaaagcttcccacacagccttggaagcatcaacaatgttgttt 28956968  T
Q  289 ttacaaggaggttggtaatcatgtt 313  Q
      |||||||||||||||||||||||    
T  28956967 ggacaaggaggttggtaatcatgtt 28956943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 313
Target Start/End: Original strand, 29068845 - 29068969
Alignment:
Q  189 atatcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttg 288  Q
    |||||||||||| ||||||||||| || |  ||||||||||| || | ||| ||||  || |||||||||||||| || || |||||||| ||||| ||     
T  29068845 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 29068944  T
Q  289 ttacaaggaggttggtaatcatgtt 313  Q
      |||||||||||||||||||||||    
T  29068945 ggacaaggaggttggtaatcatgtt 29068969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 29078043 - 29078162
Alignment:
Q  192 tcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgtta 291  Q
    ||||||||| ||||||||||| || |  ||||||||||| || | ||| ||| | || ||||||||||||||||| || |||||||| ||||||||  ||    
T  29078043 tcaagcatctgaccatgtaatgtcaaggccaccccattgttctttaggcacacctaaagctttccacacagctttggaagcatcaacaatgttgtttgta 29078142  T
Q  292 caaggaggttggtaatcatg 311  Q
    ||||| |||||||| |||||    
T  29078143 caaggtggttggtagtcatg 29078162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 287
Target Start/End: Original strand, 29110786 - 29110889
Alignment:
Q  184 atatgatatcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgt 283  Q
    |||| |||||||||||| |||||||||||||| |  ||||||||||| || | ||| ||| | || ||||||||||||||||| || |||||||| ||||    
T  29110786 atataatatcaagcatctgaccatgtaatatcaagaccaccccattgttctttaggcacacctaaagctttccacacagctttggaagcatcaacaatgt 29110885  T
Q  284 tgtt 287  Q
    ||||    
T  29110886 tgtt 29110889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 313
Target Start/End: Complemental strand, 29067009 - 29066887
Alignment:
Q  191 atcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgtt 290  Q
    |||||||||||||||||||||||||||| |||||||||||||     || ||| | |||||||||||||||||  | || |||||||| ||||| |||      
T  29067009 atcaagcatcagaccatgtaatatccaacccaccccattgattccttgggacacctaaggctttccacacagccattgaagcatcaacaatgttattggc 29066910  T
Q  291 acaaggaggttggtaatcatgtt 313  Q
    ||| |||||||| || |||||||    
T  29066909 acatggaggttgatactcatgtt 29066887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 29098499 - 29098456
Alignment:
Q  268 gaggcatcaactatgttgttgttacaaggaggttggtaatcatg 311  Q
    |||||||||||||||||||||  |||||||||||||||||||||    
T  29098499 gaggcatcaactatgttgttgcgacaaggaggttggtaatcatg 29098456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 189 - 313
Target Start/End: Original strand, 11849829 - 11849953
Alignment:
Q  189 atatcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttg 288  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11849829 atatcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 11849928  T
Q  289 ttacaaggaggttggtaatcatgtt 313  Q
    |||||||||||||| ||||||||||    
T  11849929 ttacaaggaggttgataatcatgtt 11849953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 313
Target Start/End: Complemental strand, 11851863 - 11851741
Alignment:
Q  191 atcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgtt 290  Q
    |||||||||| ||||||||||| || |  |||||||||||||| ||||| ||| ||||||||||||||||||| || || |||||||| ||||||||       
T  11851863 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 11851764  T
Q  291 acaaggaggttggtaatcatgtt 313  Q
    |||||||||||||||||||||||    
T  11851763 acaaggaggttggtaatcatgtt 11851741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 11854579 - 11854455
Alignment:
Q  189 atatcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttg 288  Q
    |||||||||||| ||||||||||| || |  ||||||||||| || | ||| ||||  || |||||||||||||| || || |||||||| ||||| ||     
T  11854579 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 11854480  T
Q  289 ttacaaggaggttggtaatcatgtt 313  Q
      |||||||||||||||||||||||    
T  11854479 ggacaaggaggttggtaatcatgtt 11854455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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