View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_63 (Length: 280)
Name: NF20179_high_63
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_63 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 28171239 - 28171347
Alignment:
| Q |
153 |
ataacttttctcccatttgcattggttttcgatcttaggcatgaatatgatacgacaaaatgttaaaacacagacgcactgcgaccttcacaattgcaga |
252 |
Q |
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| T |
28171239 |
ataacttttctcccatttgcattggttatcgatcttagtcatgaatataatacgacaaaatgttaaaacacagacgcactgcgacctgtacaattgcaga |
28171338 |
T |
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| Q |
253 |
cacagagac |
261 |
Q |
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|||| |||| |
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| T |
28171339 |
cacaaagac |
28171347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 28171004 - 28171045
Alignment:
| Q |
97 |
atgtgggacttatcttattattttgaagactgtactcactct |
138 |
Q |
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| T |
28171004 |
atgtgggacttatcttattattttgaagagtgtactcactct |
28171045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 28161449 - 28161529
Alignment:
| Q |
160 |
ttctcccatttgcattggttttcgatcttaggcatgaatatgatacgacaaaatgttaaaacacagacgcactgcgacctt |
240 |
Q |
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| T |
28161449 |
ttctcccatttgtattggttttcaatcttaatcatgactataatatgataaattgttaaaacgcaaacgcgctgcgacctt |
28161529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 28152857 - 28152896
Alignment:
| Q |
97 |
atgtgggacttatcttattattttgaagactgtactcact |
136 |
Q |
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| T |
28152857 |
atgtgggacttctcttattattttgaagagtgtactcact |
28152896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1614721 - 1614807
Alignment:
| Q |
1 |
atggttttattgtttaaatcaagaaggacaacacctttgacattttgcttgtaacccaagaaaatagattttcttgctctagaatct |
87 |
Q |
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| T |
1614721 |
atggttttggtgtttaaatcaagaagaatagcacctttgacactttgcttataacccaagaaaatgcatttcttagctctagaatct |
1614807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 8836553 - 8836518
Alignment:
| Q |
48 |
cttgtaacccaagaaaatagattttcttgctctaga |
83 |
Q |
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| T |
8836553 |
cttgtaacccaagaaaacagattttcttgctctaga |
8836518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 55310488 - 55310453
Alignment:
| Q |
48 |
cttgtaacccaagaaaatagattttcttgctctaga |
83 |
Q |
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| T |
55310488 |
cttgtaacccaagaaaacagattttcttgctctaga |
55310453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1609559 - 1609623
Alignment:
| Q |
1 |
atggttttattgtttaaatcaagaaggacaacacctttgacattttgcttgtaacccaagaaaat |
65 |
Q |
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| T |
1609559 |
atggttttggtgtttaaatcaagaagtatagtacgtttgacactttgcttataacccaagaaaat |
1609623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 26472456 - 26472421
Alignment:
| Q |
48 |
cttgtaacccaagaaaatagattttcttgctctaga |
83 |
Q |
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| T |
26472456 |
cttgtaacccaagaaaacagattttcttgctctaga |
26472421 |
T |
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