View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_64 (Length: 280)
Name: NF20179_high_64
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_64 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 14119833 - 14120053
Alignment:
| Q |
7 |
gaatgtgtctcttttatctcctctttaaacagattgaataattttgattataccgtgctcaatttcttatttttaagtgtagggtgatgtaaatggagtc |
106 |
Q |
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| T |
14119833 |
gaatgtatctcttttatctcctctttaaacagattgaataattttgattataccgtgctcaatttcttatttttaagtgtagggtgatgtaaatggagtc |
14119932 |
T |
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| Q |
107 |
tgccaaagtcatggttggtaggaattatgctttaacatttttgtcaaattaaaattaacaaatgtacatatcacattaaacatacctcaaaaataaaaac |
206 |
Q |
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| T |
14119933 |
tgccaaagtcatggttggtaggaattatgctttaacatttttgtcaaattaaaattaacaaatgtacatatcacattaaacacacctcaaaaataaaaac |
14120032 |
T |
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| Q |
207 |
ttatttaacttgcatttagtc |
227 |
Q |
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||||||||||||||||||||| |
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| T |
14120033 |
ttatttaacttgcatttagtc |
14120053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 14120070 - 14120138
Alignment:
| Q |
213 |
aacttgcatttagtcctattt-atatgcgaacttttaatttatgttattcttagttaattagttctctt |
280 |
Q |
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||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
14120070 |
aacttgcatttagtcctattttatatgctagcttttaatttatgttattcttagttaattagttctctt |
14120138 |
T |
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