View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_high_68 (Length: 266)

Name: NF20179_high_68
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_high_68
NF20179_high_68
[»] chr3 (4 HSPs)
chr3 (1-143)||(8090550-8090692)
chr3 (148-239)||(8090810-8090897)
chr3 (160-250)||(53049518-53049608)
chr3 (83-134)||(8091244-8091292)
[»] chr4 (2 HSPs)
chr4 (148-250)||(40986108-40986210)
chr4 (148-250)||(43525912-43526016)
[»] chr8 (1 HSPs)
chr8 (151-250)||(6393241-6393339)
[»] chr5 (3 HSPs)
chr5 (149-240)||(40665142-40665233)
chr5 (175-241)||(41430505-41430571)
chr5 (174-249)||(15435594-15435671)
[»] scaffold0254 (1 HSPs)
scaffold0254 (148-250)||(3945-4044)
[»] chr6 (2 HSPs)
chr6 (148-250)||(2166660-2166759)
chr6 (148-250)||(2178293-2178392)
[»] chr7 (1 HSPs)
chr7 (209-250)||(29245783-29245824)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 8090550 - 8090692
Alignment:
Q  1 gtttcttgagtcctaaaattgtgtaataatctattatcttgtcctattgaatgcatgtgacccttttctttatctatgactcttagtttatgtttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8090550 gtttcttgagtcctaaaattgtgtaataatctattcccttgtcctattgaatgcatgtgacccttttctttatctatgactcttggtttatgtttgaaat 8090649  T
Q  101 cacattgaatagtttgaagaaatcatggtgacaccattatttt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8090650 cacattgaatagtttgaagaaatcatggtgacaccattatttt 8090692  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 8090810 - 8090897
Alignment:
Q  148 cagaaattaaataataaggggatcaagtttaaaaagtatactctaattaaacaaaataacagttcaaatgtactacatatatgagaaattta 239  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  8090810 cagaaattaaacaatagggggaccaagtttaaaaagtatactctaattaaacaaaataacagttcaaatgta----atatatgagaaattta 8090897  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 53049608 - 53049518
Alignment:
Q  160 aataaggggatcaagtttaaaaagtatactctaattaaacaaaataacagttcaaatgtactacatatatgagaaatttaagctatatttg 250  Q
    |||| ||||| ||||||||||| ||||||| || |||||||||| |  ||||||||||||||||||||||||||||||||||||| |||||    
T  53049608 aatagggggaccaagtttaaaatgtatactatagttaaacaaaaaacaagttcaaatgtactacatatatgagaaatttaagctacatttg 53049518  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 8091244 - 8091292
Alignment:
Q  83 ttagtttatgtttgaaatcacattgaatagtttgaagaaatcatggtgacac 134  Q
    |||||| ||||||||||||||||||||   ||||||||||||| ||||||||    
T  8091244 ttagttcatgtttgaaatcacattgaa---tttgaagaaatcacggtgacac 8091292  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 40986108 - 40986210
Alignment:
Q  148 cagaaattaaataataaggggatcaagtttaaaaagtatactctaattaaacaaa-ataacagttcaaatgtactacatatatgagaaatttaagctata 246  Q
    ||||||||||| ||  |||||| ||||||||||| |||||||||| ||||||||| ||||  |||||||||||||||||||||||||||||||||||| |    
T  40986108 cagaaattaaacaacgaggggaccaagtttaaaatgtatactctagttaaacaaatataat-gttcaaatgtactacatatatgagaaatttaagctaca 40986206  T
Q  247 tttg 250  Q
    ||||    
T  40986207 tttg 40986210  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 43526016 - 43525912
Alignment:
Q  148 cagaaattaaataataaggggatcaagtttaaaaagtatactctaattaaacaaaata--acagttcaaatgtactacatatatgagaaatttaagctat 245  Q
    ||||||||||| |||  || || ||||||||||||||||| |||| |||||||||| |  | |||||||||  ||||||| ||||||||||| ||||||     
T  43526016 cagaaattaaacaatggggagaccaagtttaaaaagtatattctagttaaacaaaaaaataaagttcaaatacactacatgtatgagaaattcaagctac 43525917  T
Q  246 atttg 250  Q
    |||||    
T  43525916 atttg 43525912  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 6393241 - 6393339
Alignment:
Q  151 aaattaaataataaggggatcaagtttaaaaagtatactctaattaaacaaaataacagttcaaatgtactacatatatgagaaatttaagctatatttg 250  Q
    ||||||||||||  ||||| |||||||||||| ||||||||| |||||||||| || ||||||||| ||||| |||||||||||||||||| || |||||    
T  6393241 aaattaaataatggggggaccaagtttaaaaaatatactctagttaaacaaaa-aaaagttcaaatctactaaatatatgagaaatttaagttacatttg 6393339  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 40665233 - 40665142
Alignment:
Q  149 agaaattaaataataaggggatcaagtttaaaaagtatactctaattaaacaaaataacagttcaaatgtactacatatatgagaaatttaa 240  Q
    ||||||||||| |||  |||||||||||||||||||||| | || | |||||||| || |||||||||||||  ||||||||||||||||||    
T  40665233 agaaattaaattatagagggatcaagtttaaaaagtatattttagtcaaacaaaaaaaaagttcaaatgtaccgcatatatgagaaatttaa 40665142  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 41430571 - 41430505
Alignment:
Q  175 tttaaaaagtatactctaattaaacaaaataacagttcaaatgtactacatatatgagaaatttaag 241  Q
    |||||||||||||| ||| |||||||||| ||  ||||| |||||||||||||||||||||||||||    
T  41430571 tttaaaaagtatacactagttaaacaaaaaaattgttcagatgtactacatatatgagaaatttaag 41430505  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 15435671 - 15435594
Alignment:
Q  174 gtttaaaaagtatactctaattaaacaaaa-taacagtt-caaatgtactacatatatgagaaatttaagctatattt 249  Q
    |||||||| ||||||| || |||||||||| ||| | || ||||||||||||| |||||| |||||||||||| ||||    
T  15435671 gtttaaaaggtatactttagttaaacaaaaataataatttcaaatgtactacaaatatgataaatttaagctacattt 15435594  T

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Target: scaffold0254 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 3945 - 4044
Alignment:
Q  148 cagaaattaaataataaggggatcaagtttaaaaagtatactctaattaaacaaaataacagttcaaatgtactacatatatgagaaatttaagctatat 247  Q
    ||||||||||| |||  ||||| ||||||||||| |||||||||  ||||||  || || |||||||||||||| ||||| |||||||||||||||| ||    
T  3945 cagaaattaaacaatggggggaccaagtttaaaatgtatactctggttaaac--aacaaaagttcaaatgtactgcatat-tgagaaatttaagctacat 4041  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 2166759 - 2166660
Alignment:
Q  148 cagaaattaaataataaggggatcaagtttaaaaagtatactctaattaaacaaaataacagttcaaatgtactacatatatgagaaatttaagctatat 247  Q
    ||||||||||| |||  ||||| ||||||||||| |||||||||  ||||||  || || |||||||||||||| ||||| |||||||||||||||| ||    
T  2166759 cagaaattaaacaatggggggaccaagtttaaaatgtatactctggttaaac--aacaaaagttcaaatgtactgcatat-tgagaaatttaagctacat 2166663  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 2178392 - 2178293
Alignment:
Q  148 cagaaattaaataataaggggatcaagtttaaaaagtatactctaattaaacaaaataacagttcaaatgtactacatatatgagaaatttaagctatat 247  Q
    ||||||||||| |||  ||||| ||||||||||| |||||||||  ||||||  || || |||||||||||||| ||||| |||||||||||||||| ||    
T  2178392 cagaaattaaacaatggggggaccaagtttaaaatgtatactctggttaaac--aacaaaagttcaaatgtactgcatat-tgagaaatttaagctacat 2178296  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 29245783 - 29245824
Alignment:
Q  209 gttcaaatgtactacatatatgagaaatttaagctatatttg 250  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  29245783 gttcaaatgtaccacatatatgagaaatttaagctacatttg 29245824  T

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