View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_high_7 (Length: 615)
Name: NF20179_high_7
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 25)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 37 - 602
Target Start/End: Original strand, 19338172 - 19338738
Alignment:
| Q |
37 |
attttatttgtgtatagtcaatgcaggtaagaggaggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctg |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19338172 |
attttatttgtgtatagtcaatgcaggtaagaggaggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattccta |
19338271 |
T |
|
| Q |
137 |
gccaaaatgaaacaaaaatatgcacaacaaggtatatagttactttaaaatagttaatccaggtgnnnnnnnngatggatatgtataggttctattttta |
236 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19338272 |
gccaaaaagaaacaaaaatatgcactacaaggtatatggttactttaaaatagttaatccaggtaaaaaaaaagatggatatgtataggttctattttta |
19338371 |
T |
|
| Q |
237 |
tctttgannnnnnn-ggttatgtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcggaatcctatgatatcaaagatcttgaaaatg |
335 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19338372 |
tctttgattttttttggttatgtaggtaagaaaagtaaaagaaaggagggtaagatgaaagatttggcggaatcctatgatatcaaagatcttgaaaatg |
19338471 |
T |
|
| Q |
336 |
acttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctatgg |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19338472 |
acttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggatttttcatctgaaaacaagttaggacagggaggctatgg |
19338571 |
T |
|
| Q |
436 |
acccgtttataaggtgacttgaaaacaaatgtttataatgtggtcatatttttgtcatggttggcgaattttgtttcggacaaaacatatatgcattggt |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19338572 |
acccgtttataaggtgacttgaaaacaaatgtttataatgtggtaatatttttttcatggttggcgaattttgtttcggacaaaacatctatgcattggt |
19338671 |
T |
|
| Q |
536 |
tttaggtatatttagtatatggttatcaacttaagtatccattatttcttcaaatacataattttct |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19338672 |
tttaggtatatttagtatatggttatcaacttaagtatccattatttcttcaaatacataattttct |
19338738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 37 - 600
Target Start/End: Original strand, 19356197 - 19356763
Alignment:
| Q |
37 |
attttatttgtgtatagtcaatgcaggtaagaggaggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctg |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
19356197 |
attttatttgtgtatagtcaatgcaggtaagaggaggatatgggtaggtgctgcaatcgcaacttctttactcatattatgcccactcattttatgccta |
19356296 |
T |
|
| Q |
137 |
gccaaaatgaaacaaaaatatgcacaacaaggtatatagttactttaaaatagttaatccaggtgnnnnnnnn---gatggatatgtataggttctattt |
233 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19356297 |
gccaaaaagaaacaaaaatatgcactacaaggtatatggttactttaaaagagttaatccaggtaaaaaaaaaaaagatggatatgtataggttctattt |
19356396 |
T |
|
| Q |
234 |
ttatctttgannnnnnnggttatgtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcggaatcctatgatatcaaagatcttgaaaa |
333 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19356397 |
ttatctttgatttttttggttatgtaggtaagaaaagtaaaagaaaagagggtaagaggaaagatttggcggaatcctatgatatcaaagatcttgaaaa |
19356496 |
T |
|
| Q |
334 |
tgacttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctat |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19356497 |
tgacttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactttggacttttcatctgaaaacaagttaggacagggaggctat |
19356596 |
T |
|
| Q |
434 |
ggacccgtttataaggtgacttgaaaacaaatgtttataatgtggtcatatttttgtcatggttggcgaattttgtttcggacaaaacatatatgcattg |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19356597 |
ggacccgtttataaggtgacttgaaaacaaatgtttataatgtggtaatatttttttcatggttgccgaattttgtttcggacaaaacatatatgcattg |
19356696 |
T |
|
| Q |
534 |
gttttaggtatatttagtatatggttatcaacttaagtatccattatttcttcaaatacataatttt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19356697 |
gttttaggtatatttagtatatggttatcaacttaagtatccattatttcttcaaatatataatttt |
19356763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 47 - 455
Target Start/End: Complemental strand, 19538593 - 19538184
Alignment:
| Q |
47 |
tgtatagtcaatgcaggt---aagaggaggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaaa |
143 |
Q |
| |
|
|||||||| ||||||||| || ||| |||||||||||| | |||||||| ||| |||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
19538593 |
tgtatagttaatgcaggtgttaaaaggtggatatggatagtttctgcaatcacaattgctttactcatattatgcccactcattttatgccaagccaaaa |
19538494 |
T |
|
| Q |
144 |
tgaaacaaaaatatgcacaacaaggtatatagttactttaaaatagttaatccaggtgnnnnnnnngatggatatgtataggttctatttttatctttga |
243 |
Q |
| |
|
|||| ||||| |||||| ||||||||||| | |||||||||||||| ||| ||| | |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
19538493 |
agaaaaaaaaacatgcactacaaggtatatggatactttaaaatagtcaatgcagtt--aagaaaagatggatatgtataggttttatctttatctttga |
19538396 |
T |
|
| Q |
244 |
nnnnnnnggttatgtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcggaatcctatgatatcaaagatcttgaaaatgacttcaaa |
343 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| | ||||||| |||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
19538395 |
ttttttcggttatgtagataagaaaagtaaaagaaaggaaggtaagagcattgatttggtcgaatactatgatatcaaagatcttgaagatgacttcaag |
19538296 |
T |
|
| Q |
344 |
ggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctatggacccgttt |
443 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19538295 |
ggacatgatataaaagtttttaactttgcatcaatcttggaagcaactatggacttttcccctgaaaacaagttaggacagggaggctatggacccgttt |
19538196 |
T |
|
| Q |
444 |
ataaggtgactt |
455 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19538195 |
ataaggtgactt |
19538184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 47 - 455
Target Start/End: Original strand, 19397988 - 19398403
Alignment:
| Q |
47 |
tgtatagtcaatgcaggta---agaggaggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaaa |
143 |
Q |
| |
|
||||||||||||||||||| | ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
19397988 |
tgtatagtcaatgcaggtataaaaaggtggaaatggataggtgctgcaattgcaactgctttactcatattatgcccactcattatatggctagccaaaa |
19398087 |
T |
|
| Q |
144 |
tgaaacaaaaatatgcacaacaaggtatata------gttactttaaaatagttaatccaggtgnnnnnnnngatggatatgtataggttctatttttat |
237 |
Q |
| |
|
|||| |||||||||||| |||||||||| | |||||||||| || ||| || || |||||||||||||||||||||| ||||| |
|
|
| T |
19398088 |
agaaaaaaaaatatgcacttcaaggtatatcaatatggatactttaaaactgtcaatgcaagt--aaaacaagatggatatgtataggttctatctttat |
19398185 |
T |
|
| Q |
238 |
ctttgannnnnnnggttatgtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcggaatcctatgatatcaaagatcttgaaaatgac |
337 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||| |||||||| || ||||||| |||||| ||||||||||||||||||||| ||||| |
|
|
| T |
19398186 |
ctttgatttttttggttatgtagataagaaaagtaaaagaaaggaaggtaagagcaatgatttggtggaatcatatgatatcaaagatcttgaagatgac |
19398285 |
T |
|
| Q |
338 |
ttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctatggac |
437 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
19398286 |
ttcaagggacatgatataaaagtttttaactttacatcaatcttggaagcaactatggaattttcccctgaaaacaagttaggacagggaggttatggac |
19398385 |
T |
|
| Q |
438 |
ccgtttataaggtgactt |
455 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19398386 |
ccgtttataaggtgactt |
19398403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 47 - 455
Target Start/End: Original strand, 19414344 - 19414759
Alignment:
| Q |
47 |
tgtatagtcaatgcaggta---agaggaggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaaa |
143 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
19414344 |
tgtatagtcaatgcaggtataaaaaggtggatatggataggtgctgcaattacaactgctttactcatattatgcccactcattatatggctagccaaaa |
19414443 |
T |
|
| Q |
144 |
tgaaacaaaaatatgcacaacaaggtatata------gttactttaaaatagttaatccaggtgnnnnnnnngatggatatgtataggttctatttttat |
237 |
Q |
| |
|
|||| |||||||||||| | |||||||| | |||||||||| ||| ||| || || |||||||||||||||||||||| ||||| |
|
|
| T |
19414444 |
agaaaaaaaaatatgcacttccaggtatatcaatatggatactttaaaacagtcaatgcaagt--aaaacaagatggatatgtataggttctatctttat |
19414541 |
T |
|
| Q |
238 |
ctttgannnnnnnggttatgtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcggaatcctatgatatcaaagatcttgaaaatgac |
337 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||| |||||||| || ||||||| |||||| ||||||||||||||||||||| | ||| |
|
|
| T |
19414542 |
ctttgatttttttggttatgtagataagaaaagtaaaagaaaggaaggtaagagcaatgatttggtggaatcatatgatatcaaagatcttgaagacgac |
19414641 |
T |
|
| Q |
338 |
ttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctatggac |
437 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
19414642 |
ttcaagggacatgatataaaagtttttaactttacatcaatcttggaagcaactatggaattttcccctgaaaacaagttaggacagggaggttatggac |
19414741 |
T |
|
| Q |
438 |
ccgtttataaggtgactt |
455 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19414742 |
ccgtttataaggtgactt |
19414759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 47 - 455
Target Start/End: Complemental strand, 19552894 - 19552476
Alignment:
| Q |
47 |
tgtatagtcaatgcaggtaaga---ggaggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaaa |
143 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
19552894 |
tgtatagtcaatgcaggtataaaatggtggatatggatatgtgctgcaattgcaactactttactcatattatgcccactcattatatggctagccaaaa |
19552795 |
T |
|
| Q |
144 |
tgaaacaaaaatatgcacaacaaggtatata------gttactttaaaatagttaatccaggtgnnnnnnnngatggatatgtataggttctatttttat |
237 |
Q |
| |
|
|||| |||||||||||| |||||||||| | |||||||||| ||| ||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
19552794 |
agaaaaaaaaatatgcacttcaaggtatatcaatatggatactttaaaacagtcaatgcaggt--aaaacaagatggatatgtataggttctatctttat |
19552697 |
T |
|
| Q |
238 |
ctttgannnnnnn---ggttatgtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcggaatcctatgatatcaaagatcttgaaaat |
334 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
19552696 |
ctttgattatttttttggttatgtagttaagaaaagtaaaagaaaggaaggtaagaacattgatttggtggaatcctatgatatcaaagatcttgaagat |
19552597 |
T |
|
| Q |
335 |
gacttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctatg |
434 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
19552596 |
gacttcaagggacatgatataaaagtttttaactttacatcaatattggaagcaactatggacttttcccatgaaaacaagttaggacagggaggctatg |
19552497 |
T |
|
| Q |
435 |
gacccgtttataaggtgactt |
455 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
19552496 |
gacccgtttataaggtgactt |
19552476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 47 - 455
Target Start/End: Original strand, 19579794 - 19580212
Alignment:
| Q |
47 |
tgtatagtcaatgcaggtaaga---ggaggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaaa |
143 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
19579794 |
tgtatagtcaatgcaggtataaaatggtggatatggatatgtgctgcaattgcaactactttactcatattatgcccactcattatatggctagccaaaa |
19579893 |
T |
|
| Q |
144 |
tgaaacaaaaatatgcacaacaaggtatata------gttactttaaaatagttaatccaggtgnnnnnnnngatggatatgtataggttctatttttat |
237 |
Q |
| |
|
|||| |||||||||||| |||||||||| | |||||||||| ||| ||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
19579894 |
agaaaaaaaaatatgcacttcaaggtatatcaatatggatactttaaaacagtcaatgcaggt--aaaacaagatggatatgtataggttctatctttat |
19579991 |
T |
|
| Q |
238 |
ctttgannnnnnn---ggttatgtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcggaatcctatgatatcaaagatcttgaaaat |
334 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
19579992 |
ctttgattatttttttggttatgtagttaagaaaagtaaaagaaaggaaggtaagaacattgatttggtggaatcctatgatatcaaagatcttgaagat |
19580091 |
T |
|
| Q |
335 |
gacttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctatg |
434 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
19580092 |
gacttcaagggacatgatataaaagtttttaactttacatcaatattggaagcaactatggacttttcccatgaaaacaagttaggacagggaggctatg |
19580191 |
T |
|
| Q |
435 |
gacccgtttataaggtgactt |
455 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
19580192 |
gacccgtttataaggtgactt |
19580212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 252 - 455
Target Start/End: Original strand, 19288639 - 19288842
Alignment:
| Q |
252 |
gttatgtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcggaatcctatgatatcaaagatcttgaaaatgacttcaaaggacatga |
351 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| | |||||| || ||||| ||||||| ||| |||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
19288639 |
gttatgtagataacaaaagtaaaagaaaggaagataagagcaatgatttagcggaattctacgatatcaaagatcttgaagatgacttcaagggacatga |
19288738 |
T |
|
| Q |
352 |
tataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctatggacccgtttataaggtg |
451 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
19288739 |
tataaaagtttttaactatgcatcaattttggaagcaactattgacttttcacctgaaaacaagttaggacagggaggttatggacctgtttataaggtg |
19288838 |
T |
|
| Q |
452 |
actt |
455 |
Q |
| |
|
|||| |
|
|
| T |
19288839 |
actt |
19288842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 257 - 455
Target Start/End: Original strand, 19406332 - 19406539
Alignment:
| Q |
257 |
gtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcgga---------atcctatgatatcaaagatcttgaaaatgacttcaaaggac |
347 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| || ||||||||||| |||||||||| | |||||||||||| ||||||||| |||| |
|
|
| T |
19406332 |
gtagataagaaaagtaaaagaaaggcgggtaagagcaatgatttggcggactccattgaatcctatgatgttaaagatcttgaagctgacttcaagggac |
19406431 |
T |
|
| Q |
348 |
atgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctatggacccgtttataa |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19406432 |
atgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcccctgaaaacaagttaggacagggaggctatggaccagtttataa |
19406531 |
T |
|
| Q |
448 |
ggtgactt |
455 |
Q |
| |
|
|||||||| |
|
|
| T |
19406532 |
ggtgactt |
19406539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 305 - 455
Target Start/End: Complemental strand, 19501740 - 19501590
Alignment:
| Q |
305 |
gaatcctatgatatcaaagatcttgaaaatgacttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcac |
404 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19501740 |
gaatcctataatatcaaagatcttgaagatgacttcaagggacatgatataaaagtttttaactatacatcaattttggaagcaactatggacttttcac |
19501641 |
T |
|
| Q |
405 |
ctgaaaacaagttaggacagggaggctatggacccgtttataaggtgactt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19501640 |
ctgaaaacaagttaggacagggaggctatggacctgtttataaggtgactt |
19501590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 257 - 455
Target Start/End: Original strand, 19453270 - 19453477
Alignment:
| Q |
257 |
gtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcgga---------atcctatgatatcaaagatcttgaaaatgacttcaaaggac |
347 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||| || |||||||| || |||||||||| | |||||||||||| ||||||||| |||| |
|
|
| T |
19453270 |
gtagataagaaaggtaaaagaaaggcgggtaagagcaatgatttggcagactccattgaatcctatgatgttaaagatcttgaagctgacttcaagggac |
19453369 |
T |
|
| Q |
348 |
atgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctatggacccgtttataa |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
19453370 |
atgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcccctgaaaacaagttaggacaaggaggctatggaccagtttataa |
19453469 |
T |
|
| Q |
448 |
ggtgactt |
455 |
Q |
| |
|
|||||||| |
|
|
| T |
19453470 |
ggtgactt |
19453477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 257 - 455
Target Start/End: Complemental strand, 19527805 - 19527598
Alignment:
| Q |
257 |
gtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcgga---------atcctatgatatcaaagatcttgaaaatgacttcaaaggac |
347 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||| || |||||||| || |||||||||| | |||||||||||| ||||||||| |||| |
|
|
| T |
19527805 |
gtagataagaaaggtaaaagaaaggcgggtaagagcaatgatttggcagactccattgaatcctatgatgttaaagatcttgaagctgacttcaagggac |
19527706 |
T |
|
| Q |
348 |
atgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctatggacccgtttataa |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
19527705 |
atgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcccctgaaaacaagttaggacaaggaggctatggaccagtttataa |
19527606 |
T |
|
| Q |
448 |
ggtgactt |
455 |
Q |
| |
|
|||||||| |
|
|
| T |
19527605 |
ggtgactt |
19527598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 305 - 455
Target Start/End: Original strand, 19347247 - 19347397
Alignment:
| Q |
305 |
gaatcctatgatatcaaagatcttgaaaatgacttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcac |
404 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19347247 |
gaatcctataatatcaaagatcttgaacatgacttcaaggaacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcac |
19347346 |
T |
|
| Q |
405 |
ctgaaaacaagttaggacagggaggctatggacccgtttataaggtgactt |
455 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
19347347 |
ctaaaaacaagttaggacagggcggctatggacccatttataaggtaactt |
19347397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 305 - 455
Target Start/End: Original strand, 19377937 - 19378087
Alignment:
| Q |
305 |
gaatcctatgatatcaaagatcttgaaaatgacttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcac |
404 |
Q |
| |
|
||||| ||||||||||||||||||||| | || || || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
19377937 |
gaatcttatgatatcaaagatcttgaagacgattttaagggacatgatataaaagtttttaactttatatcaattttggaagcaactatggacttttccc |
19378036 |
T |
|
| Q |
405 |
ctgaaaacaagttaggacagggaggctatggacccgtttataaggtgactt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19378037 |
ctgaaaacaagttaggacagggaggctatggacctgtttataaggtgactt |
19378087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 305 - 455
Target Start/End: Complemental strand, 19171496 - 19171346
Alignment:
| Q |
305 |
gaatcctatgatatcaaagatcttgaaaatgacttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcac |
404 |
Q |
| |
|
||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
19171496 |
gaatcctttggtgtcaaagatcttgaagatgacttcaaaggacatgatataaaagtttttaactattcatcaattttggaagcaactatgaacttttcac |
19171397 |
T |
|
| Q |
405 |
ctgaaaacaagttaggacagggaggctatggacccgtttataaggtgactt |
455 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
19171396 |
ctgaaaacaagttagggcagggaggttatggacctgtttataaggtgactt |
19171346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 19406115 - 19406260
Alignment:
| Q |
45 |
tgtgtatagtcaatgcaggtaagaggaggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaaat |
144 |
Q |
| |
|
||||||||||| |||||||||| | | |||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||| ||| | |||| |
|
|
| T |
19406115 |
tgtgtatagtcgatgcaggtaaaaagtggatatggataggtgctgcaatcgcatctgctatactcatattatgtccactcgttttatgcctagtaaaaaa |
19406214 |
T |
|
| Q |
145 |
gaaacaaaaatatgcacaacaaggtatatagttactttaaaatagt |
190 |
Q |
| |
|
|| ||||||||||| | ||||||||||| | ||| |||||||||| |
|
|
| T |
19406215 |
gattcaaaaatatgctctacaaggtatatggatacattaaaatagt |
19406260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 19453053 - 19453199
Alignment:
| Q |
44 |
ttgtgtatagtcaatgcaggtaagaggaggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaaa |
143 |
Q |
| |
|
||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||| | |||||| |||| |||||| |||||| ||| | |||| |
|
|
| T |
19453053 |
ttgtgtatagtcaatgcaggtaaaaagtggatatggataggtgctgcaatcgcatctgctctgctcatactatgtccactccttttatgcctagtaaaaa |
19453152 |
T |
|
| Q |
144 |
tgaaacaaaaatatgcacaacaaggtatatagttactttaaaatagt |
190 |
Q |
| |
|
|| ||||||||||| | ||||||||||| | ||| |||||||||| |
|
|
| T |
19453153 |
agattcaaaaatatgctctacaaggtatatggatacattaaaatagt |
19453199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 44 - 190
Target Start/End: Complemental strand, 19528023 - 19527877
Alignment:
| Q |
44 |
ttgtgtatagtcaatgcaggtaagaggaggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaaa |
143 |
Q |
| |
|
||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||| | |||||| |||| |||||| |||||| ||| | |||| |
|
|
| T |
19528023 |
ttgtgtatagtcaatgcaggtaaaaagtggatatggataggtgctgcaatcgcatctgctctgctcatactatgtccactccttttatgcctagtaaaaa |
19527924 |
T |
|
| Q |
144 |
tgaaacaaaaatatgcacaacaaggtatatagttactttaaaatagt |
190 |
Q |
| |
|
|| ||||||||||| | ||||||||||| | ||| |||||||||| |
|
|
| T |
19527923 |
agattcaaaaatatgctctacaaggtatatggatacattaaaatagt |
19527877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 19346976 - 19347125
Alignment:
| Q |
44 |
ttgtgtatagtcaatgcaggtaagagga---ggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggcca |
140 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||| | || |||||||| |||||||||||||||| |||||| ||||||||| | | |||| |
|
|
| T |
19346976 |
ttgtgtatagtcaatgcaggtaaaaaaaagtggatatggataacttctacaatcgcagctgctttactcatattttgcccaatcattttatgcttagcca |
19347075 |
T |
|
| Q |
141 |
aaatgaaacaaaaatatgcacaacaaggtatatagttactttaaaatagt |
190 |
Q |
| |
|
||| ||||||||||||||||| |||||||||| | ||||| |||||||| |
|
|
| T |
19347076 |
aaaagaaacaaaaatatgcacttcaaggtatatggatacttcaaaatagt |
19347125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 19377698 - 19377797
Alignment:
| Q |
72 |
ggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaaatgaaacaaaaatatgcacaacaaggtat |
171 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| || ||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
19377698 |
ggatatggataggtgttgcaatcggaactgctttactcatattatgcccactcattatatggctagccaaaaagaaacaaaaatattcacttcaaggtat |
19377797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 19501971 - 19501857
Alignment:
| Q |
72 |
ggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaaatgaaacaaaaatatgcacaacaaggtat |
171 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||||||||||||||||| |||| ||| ||| ||| || |||| ||||||||||||||||| ||||||||| |
|
|
| T |
19501971 |
ggatatggatcggtgttgcaaccgcaactgctttactcatattatgctcacttattctatgcctagcaaaaaagaaacaaaaatatgcactacaaggtat |
19501872 |
T |
|
| Q |
172 |
atagttactttaaaa |
186 |
Q |
| |
|
|| | ||||| |||| |
|
|
| T |
19501871 |
atggatacttgaaaa |
19501857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 19171763 - 19171645
Alignment:
| Q |
46 |
gtgtatagtcaatgcaggtaagagga---ggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaa |
142 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||| |||| |||||| ||| ||||| ||||| ||||||||||||| ||||||| | || ||| |
|
|
| T |
19171763 |
gtgtatagtcaatgcaggtaaaagcatgcggatatggattggtgttgcaatagcagctgctatactcctattatgcccacttcttttatttgtcgcgaaa |
19171664 |
T |
|
| Q |
143 |
atgaaacaaaaatatgcac |
161 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
19171663 |
aagaaacaaaaatatgcac |
19171645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 19288461 - 19288548
Alignment:
| Q |
72 |
ggatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggccaaaatgaaacaaaaatatgc |
159 |
Q |
| |
|
|||||| ||||||||||||||| ||| ||||| |||||||||||||||||||| |||||| | | ||||| ||||||||||||||| |
|
|
| T |
19288461 |
ggatattgataggtgctgcaatagcagctgctatactcatattatgcccactccttttatgtgtagtcaaaaggaaacaaaaatatgc |
19288548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 19186539 - 19186595
Alignment:
| Q |
397 |
cttttcacctgaaaacaagttaggacagggaggctatggacccgtttataaggtgac |
453 |
Q |
| |
|
||||||| | |||||||||||||||||||| |||| |||||| |||| ||||||||| |
|
|
| T |
19186539 |
cttttcatcagaaaacaagttaggacagggtggctttggacctgtttttaaggtgac |
19186595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 450
Target Start/End: Original strand, 15942014 - 15942069
Alignment:
| Q |
395 |
gacttttcacctgaaaacaagttaggacagggaggctatggacccgtttataaggt |
450 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| |||| | |||| |||||| |
|
|
| T |
15942014 |
gacttttcatctgaaaacaagttaggacagggtggctttggatcggtttttaaggt |
15942069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 251 - 455
Target Start/End: Complemental strand, 36312692 - 36312479
Alignment:
| Q |
251 |
ggttatgtaggtaagaaaagtaaaagaaaggagggtaagaggaaagatttggcggaatcc---------tatgatatcaaagatcttgaaaatgacttca |
341 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
36312692 |
ggttatgtagataagaaaaataaaagaaaggagggtaagagcgaacatttggcggattccaatgaatcatatgatatcaaagatcttgaagatgacttca |
36312593 |
T |
|
| Q |
342 |
aaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcacctgaaaacaagttaggacagggaggctatggacccgt |
441 |
Q |
| |
|
| |||||||||||||||||||||||||| || ||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36312592 |
agggacatgatataaaagtttttaacttcgcaacaattttagaagcaactatgaatttttcccctgaaaacaagttaggacagggaggctatggacccgt |
36312493 |
T |
|
| Q |
442 |
ttataaggtgactt |
455 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36312492 |
ttataaggtgactt |
36312479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 36312903 - 36312791
Alignment:
| Q |
44 |
ttgtgtatagtcaatgcaggtaagaggag---gatatggataggtgctgcaatcgcaactgctttactcatattatgcccactcattttattcctggcca |
140 |
Q |
| |
|
||||||||||||||||||||||| | || |||||| |||| |||||||||||||||||||||||||||||| | ||| |||||||||| | | |||| |
|
|
| T |
36312903 |
ttgtgtatagtcaatgcaggtaaaaaaagatggatatgaatagctgctgcaatcgcaactgctttactcatattgttcccgctcattttatgcatagcca |
36312804 |
T |
|
| Q |
141 |
aaatgaaacaaaa |
153 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
36312803 |
aaaagaaaaaaaa |
36312791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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