View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_72 (Length: 250)
Name: NF20179_high_72
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_72 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 35018693 - 35018833
Alignment:
| Q |
11 |
cataggaaaacaagatccgtgagaggttcaaaaaacatgacaacccttccaaaagtcaacatcattagctttaatatgtctcagtaataatggtatacta |
110 |
Q |
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| T |
35018693 |
cataggaaaacaagatccgtgagaggttcaaaaaacatgacaacccttccaaaagtcaacatcattagctttaatatgtctcagtaataatggtatacta |
35018792 |
T |
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| Q |
111 |
ttactaacaaaagttctaatggaaaattttattatataatg |
151 |
Q |
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| T |
35018793 |
ttactaacaaaagttctcatggaaaattttattatttaatg |
35018833 |
T |
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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 35018840 - 35018874
Alignment:
| Q |
144 |
atataatgtgatgaagtatattcattcatatttta |
178 |
Q |
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| T |
35018840 |
atataatgtgatgaagtatattcattcatatttta |
35018874 |
T |
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