View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_77 (Length: 237)
Name: NF20179_high_77
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_77 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 35430127 - 35430340
Alignment:
| Q |
5 |
cttacatgcttgattactcaatataggttaaacaaacacnnnnnnntactcttaaattccattacttcgcttttaggagcacttaggaaaaaagaagaat |
104 |
Q |
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| T |
35430127 |
cttacatgcttgattactcaatataggttaaacaaacacaaaa---tactcttaaatcccattacttcgcttttaggagcacttaggaaaaaagaagaat |
35430223 |
T |
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| Q |
105 |
gtacacagagaaagtgtacgtcatctagaaaattttaatcatatgaatgtacatcatctagaaaatcttcagtagtcacatagtttttcctgttagtaat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
35430224 |
gtacacagagaaagtgtacgtcatctagaaaattttaatcatatgaatgtacatcatctagaaaatcttcagcagtcacatagtttttcccattagtaat |
35430323 |
T |
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| Q |
205 |
cttaataatgatgtttg |
221 |
Q |
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||||||||||||||||| |
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| T |
35430324 |
cttaataatgatgtttg |
35430340 |
T |
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