View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_79 (Length: 236)
Name: NF20179_high_79
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_79 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 6164705 - 6164485
Alignment:
| Q |
16 |
atatttacacctataggagttcttgatcatgcttcaacaagaggttaaaggagattttagttcttatgttggcatcaaagctgttgtttatgctgaatta |
115 |
Q |
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| T |
6164705 |
atatttacacctatagaagttcttgatcatgcttcaacaagaggttaaaggagattttagttcttatgttggcatcaaagctgttgtttatgctgaatta |
6164606 |
T |
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| Q |
116 |
ctagctgctatgaaaggcattgaaataggttaggagaaaaattagaatttcatttgtcttgaatgtgacttattatggacgcttttaagaatcatcatat |
215 |
Q |
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| T |
6164605 |
ctagctgctatgaaaggcattgaaataggttaggagagaaattagaatttcatttgtcttgaatgtgacttattatggacgcttttaagaatcatcatat |
6164506 |
T |
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| Q |
216 |
tgctccatggaagttgttccc |
236 |
Q |
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| T |
6164505 |
tgctccatggaagttgttccc |
6164485 |
T |
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