View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_83 (Length: 228)
Name: NF20179_high_83
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_83 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: scaffold0039 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 24294 - 24488
Alignment:
| Q |
18 |
attttgtggctacttaagcaatccaagatcaagtgttgcatcaatgggggtgttaatccaaattacttcattgatgtacatttttccttattcactaagc |
117 |
Q |
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| T |
24294 |
attttgtggctacttaagcaatccaagatcaagtgttgcatcaatgggggtgttaatccaaattacttcacttatgtacatttttccttactcactaagc |
24393 |
T |
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| Q |
118 |
aatagtgtttcaacaagagttggtaacatgataggtgcacaaaagccatcaaaagcaaaactttcagcaatttcaggactttctttcagcttcat |
212 |
Q |
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| T |
24394 |
aatagtgtttcaacaagagttggtaacatgataggtgcacaaaagccatcaaaagcaaaactttcagcaatttcaggactttctttcagcttcat |
24488 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 45845721 - 45845652
Alignment:
| Q |
120 |
tagtgtttcaacaagagttggtaacatgataggtgcacaaaagccatcaaaagcaaaactttcagcaatt |
189 |
Q |
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| T |
45845721 |
tagtgtttccactagagttggtaacaaacttggtgctcaaaagccatcaaaagcaaaactttcagcaatt |
45845652 |
T |
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