View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_86 (Length: 214)
Name: NF20179_high_86
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_86 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 27093010 - 27092810
Alignment:
| Q |
1 |
cccttagagagtaatcaattaatcaaccactccttatgtatcaaacgttctactaatttattggcaatccatattttgtgataatatttatgcatgtata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27093010 |
cccttagagagtaatcaattaatcaaccactccttatgtatcaaacgttctactaattaattggcaatccatattttgtgataacatttatgcatgtata |
27092911 |
T |
|
| Q |
101 |
ggtataggcagaagtataagaaagtggataaccaagcactaaagaattgggcacgccagattctaagtggtttggaatatttacacaaccataatcctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27092910 |
ggtataggcagaagtataagaaagtggataaccaagcactaaagaattgggcacgccagattctaagtggtttggaatatttacacaaccataatcctcc |
27092811 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
27092810 |
t |
27092810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 27185291 - 27185491
Alignment:
| Q |
1 |
cccttagagagtaatcaattaatcaaccactccttatgtatcaaacgttctactaatttattggcaatccatattttgtgataatatttatgcatgtata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
27185291 |
cccttagagagtaatcaattaatcaaccactccttatgtatcaaacgttctactaattaattggcaatccatattttgtgataacatttatgcatgtata |
27185390 |
T |
|
| Q |
101 |
ggtataggcagaagtataagaaagtggataaccaagcactaaagaattgggcacgccagattctaagtggtttggaatatttacacaaccataatcctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27185391 |
ggtataggcagaagtataagaaagtggataaccaagcactaaagaattgggcacgccagattctaagtggtttggaatatttacacaaccataatcctcc |
27185490 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
27185491 |
t |
27185491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 9907810 - 9907876
Alignment:
| Q |
135 |
agcactaaagaattgggcacgccagattctaagtggtttggaatatttacacaaccataatcctcct |
201 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||| ||||| || | |||| |||||||| |
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| T |
9907810 |
agcaataaagaattgggctcgccagattctaagtggtttggagtatttgcatagccatgatcctcct |
9907876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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