View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_89 (Length: 210)
Name: NF20179_high_89
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_89 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 50307398 - 50307210
Alignment:
| Q |
1 |
catgttcttgaatattctcaatttcttctacttccccagcattatcattgtttgtgatagcttctttaacttttggttctgtcttagtttcaacaacatt |
100 |
Q |
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| T |
50307398 |
catgttcttgaatattctcaatttcttctacttccccagcattatcattgtttgtgatagcttctttaacttttggttctgtcttagtttcaacaacatt |
50307299 |
T |
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| Q |
101 |
gattgtttctgttgtttcttcattattagtactactttttgtagcaagattctttgaactactcttcttagtagtaccttgttttggagtct |
192 |
Q |
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| T |
50307298 |
gattgtttctgttgtttcttc---attagtactactttttgtagcaagattctttgaactactcttcttagtagtaccttgttttggagtct |
50307210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50307725 - 50307688
Alignment:
| Q |
1 |
catgttcttgaatattctcaatttcttctacttcccca |
38 |
Q |
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| T |
50307725 |
catgttcttgaatattctcaattttttctacttcccca |
50307688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 50307641 - 50307605
Alignment:
| Q |
4 |
gttcttgaatattctcaatttcttctacttccccagc |
40 |
Q |
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| T |
50307641 |
gttctagaatattctcaattttttctacttccccagc |
50307605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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