View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_9 (Length: 609)
Name: NF20179_high_9
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 219 - 598
Target Start/End: Complemental strand, 979233 - 978850
Alignment:
| Q |
219 |
caatcactttatattaatacttgggttctaatactcagagtttt-tcccctgtttacatctcaatttccaaccgaattatgttcctttgagtttattctt |
317 |
Q |
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| T |
979233 |
caatcactttatattaatacctgggttctaatactcagagttttatcccctgtttacatctcaatttccaatcgaatcaggttcctttgagtttattctt |
979134 |
T |
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| Q |
318 |
tggctttcctttttgccttttcttcaccttgacccaagattaatcccctcttcttgatttctgaggtttttcctttgcttttgtttgggtccccctggtg |
417 |
Q |
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| T |
979133 |
tggctttcctttttgccttttcttcaccttgacccaagattaatcttctcttcttgatttttgaggtttttcctttgcttctgtttgggtccacctggtg |
979034 |
T |
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| Q |
418 |
ctagaatcttttatctcctgggttgttatatgtgtttctttctttcagttgtactctacaagaattattgatttctttatcagagcgtattcaccttttc |
517 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
979033 |
ctagaatcttttatctcctgggttcttatatgtgtctctttctttcagttgtactctacaagaattattgatttctttatcataatgtattcaccttttc |
978934 |
T |
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| Q |
518 |
tttttctatgtgcttttgtctgttaccctacataaac---cttggtttcttctagatttcatctttctctatattcttctctct |
598 |
Q |
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||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
978933 |
tttttctctgtgcttttgtctgttaccctacagaaaccttcttggtttcttctagatttcatttttctctatattcttctctct |
978850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 979431 - 979302
Alignment:
| Q |
19 |
aaaagtacggtttcaaatttagttgacagaattgatgcctccttgaactctctccacacctctctttcctcttatcttactttgttatccttccttaatc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
979431 |
aaaagtacggtttcaaatttagttgacagaattgatgcctccttgaactctctccacacctct--ttcctcttctcttactttgttatccttccttaatc |
979334 |
T |
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| Q |
119 |
tagttgaaagaaagattctggatagttggtac |
150 |
Q |
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| T |
979333 |
tagttgaaagacagattctggatagttggtac |
979302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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