View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_1 (Length: 979)
Name: NF20179_low_1
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 906; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 906; E-Value: 0
Query Start/End: Original strand, 17 - 962
Target Start/End: Complemental strand, 19578287 - 19577342
Alignment:
| Q |
17 |
acaaaccgctacaaattattccaaccatcaaaggaaaactctccataacttgatccatctctttttcatgtccaggaaataaacaattagtaaccctata |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19578287 |
acaaaccgctacaaattattccaaccatcaaaggaaaactctccataacttgatccatctctttttcatgtccaggaaataaacaattagtaaccctata |
19578188 |
T |
|
| Q |
117 |
atccgaaaaagcgatagccacaaacaccataaccgacataaccgcatgcacgaaatcttgaaacccaactttgtacttgtcatcattaggaaccaaaaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19578187 |
atccgaaaaagcgatagccacaaacaccataaccgacataaccgcatgcacgaaatcttgaaacccaactttgtacttgtcatcattaggaaccaaaaca |
19578088 |
T |
|
| Q |
217 |
gtgagtcccggtttaaaaaccgacaacccgttccgagtagcaaaaccatagtaaacgttaccatccgcgccgtgaaaactatcggtaaagtgaaagaaga |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19578087 |
gtgagtcccggtttaaaaacagacaacccgttccgagtagcaaaaccatagtaaacgttaccatccgcgccgtgaaaactgtcggtaaagtgaaagaaga |
19577988 |
T |
|
| Q |
317 |
aacaagagagtgcacacatgattaagaggaaatggatcatgatggtatgaacatgagtgcattgaccatttcggtagattgaaggaaggaccatttcgaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19577987 |
aacaagagagtgcacacatgattaagaggaaatggatcatgatggtatgaacatgagtgcattgaccatttcggtagattgaaggaaggaccatttcgaa |
19577888 |
T |
|
| Q |
417 |
tgttatgagtgttcctgttggaaggaagtttccgagtaaggatgtttttgagagggttttttggacaccttttgccattatggcgcgacgtttcttgcca |
516 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19577887 |
tgttatgagtgttcctgttggaaggaagtttccgagtaaggatgtttttgagagggttttttggacaccttttgccattatggcgcgacgtttcttgcca |
19577788 |
T |
|
| Q |
517 |
ggttccggtggatcggaaggctggtgtgtgacgccgcctatggcctcttgtggtggaggtgttgcattgtagactttgatcccaatttcttgttgagttt |
616 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19577787 |
ggttccggtggatcgaaaggctggtgtgtgacgccgcctatggcctcttgtggtggaggagttgcattgtagactttgatcccaatttcttgttgagttt |
19577688 |
T |
|
| Q |
617 |
gttccatatttgattatttgtgaagagcgtgtgatgtgatacaatattggtgattgtgaatcaatgaaatggatttgaatgttggttatatagtgcaaag |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19577687 |
gttccatatttgattatttgtgaagagcgtgtgatgtgatacaatattggtgattgtgaatcaatgaaatggatttgaatgttggttatatagtgcaaag |
19577588 |
T |
|
| Q |
717 |
tacatccgtatcagtttaaattttttgagcagttggttaaccaattgttattttaacttgtaacttaaatatgctgaacgttgaagttagatgcaatatt |
816 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
19577587 |
tacatccgtatcagtttaaattttttgagcagttggttaaccaattgttattttaacttgtaacttaaatatgttgaacgttgaagttagatgcaatatt |
19577488 |
T |
|
| Q |
817 |
ttaaaaaacgatccggccagtttgctgggaaccctagtctggtttgattcagtcatgtcaagtgaacccaagggcgtatctgaactctcaatatcggtga |
916 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19577487 |
ttaaaaaacgatccggccagtttaccgggaaccctagtctggtttgattcggtcatgtcaagtgaacccaagggcgtatctggactctcaatatcggtga |
19577388 |
T |
|
| Q |
917 |
ggcataattttttgtcaaataattaaataaaacgtacacaggttct |
962 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
19577387 |
ggcataattttttgtcaaataattaaataaaacgtacacatgttct |
19577342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 631
Target Start/End: Original strand, 2787307 - 2787921
Alignment:
| Q |
17 |
acaaaccgctacaaattattccaaccatcaaaggaaaactctccataacttgatccatctctttttcatgtccaggaaataaacaattagtaaccctata |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| ||||||||| | |||||||| |
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|
| T |
2787307 |
acaaaccgctacaaacaattccaaccatcaatggaaaactctccataacttgatccatttccctttcatgtccaggaaacaaacaattactcaccctata |
2787406 |
T |
|
| Q |
117 |
atccgaaaaagcgatagccacaaacaccataaccgacataaccgcatgcacgaaatcttgaaacccaactttgtacttgtcatcattaggaaccaaaaca |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| ||||| || |||||||||||||| || ||||| ||||| || ||||||||||||||| |
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|
| T |
2787407 |
atccgaaaaagcgatcgccacaaacaccataactgacataactgcatgaacaaaatcttgaaaccctaccttgtatttgtcgtcgttaggaaccaaaaca |
2787506 |
T |
|
| Q |
217 |
gtgagtcccggtttaaaaaccgacaacccgttccgagtagcaaaaccatagtaaacgttaccatccgcgccgtgaaaactatcggtaaagtgaaagaaga |
316 |
Q |
| |
|
| ||||| ||||||||||| || ||||| ||| | ||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||| |
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|
| T |
2787507 |
gcaagtcctggtttaaaaacggataaccctttcggggtaacaaaaccatagtaaacattaccatcagcgccgtgaaaactatctgtaaagtgaaaaaaga |
2787606 |
T |
|
| Q |
317 |
aacaagagagtgcacacatgattaagaggaaatggatcatgatggtatgaacatgagtgcattgaccatttcggtagattgaaggaaggaccatttcgaa |
416 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||||||| || || ||||| ||||| || || | ||||| |||||||||||||||||||| |
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|
| T |
2787607 |
aacaagagagtgcacatataattaaaaggaaatggatcatgatggtgtgtacgtgagtacattggccgttcctatagatcgaaggaaggaccatttcgaa |
2787706 |
T |
|
| Q |
417 |
tgttatgagtgttcctgttggaaggaagtttccgagtaaggatgtttttgagagggttttttggacaccttttgccattatggcgcgacgtttcttgcca |
516 |
Q |
| |
|
||| | ||||||||||| |||||||||||| || |||||||| |||||||| ||||||||||| || ||||| ||||||||||| ||||| ||||||||| |
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|
| T |
2787707 |
tgtgaggagtgttcctgatggaaggaagttaccaagtaaggaagtttttgaaagggttttttgcacgcctttcgccattatggcacgacgcttcttgcca |
2787806 |
T |
|
| Q |
517 |
ggttccggtggatcggaaggctggtgtgtgacgccgcctatggcctcttgtggtggaggtgttgcattgtagactttgatcccaatttcttgttgagttt |
616 |
Q |
| |
|
||||||||||||| |||||||| || || ||| | || ||| | ||||||||||| ||||||| |||||||| |||||| |||||||||||||| |||| |
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|
| T |
2787807 |
tgttccggtggatcagaaggctgctgcgttacggcccccatgacttcttgtggtggcggtgttgtattgtagattttgattccaatttcttgttgtgttt |
2787906 |
T |
|
| Q |
617 |
gttccatatttgatt |
631 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2787907 |
gttccatatttgatt |
2787921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 888 - 956
Target Start/End: Original strand, 7138208 - 7138280
Alignment:
| Q |
888 |
gggcgtatctgaactctcaatatcggtgaggcataatttttt----gtcaaataattaaataaaacgtacaca |
956 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
7138208 |
gggcggatctgaactcaaaatattggtgaggcacaattttttcgcggtcaaataattaaataaaacgtacaca |
7138280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 894 - 952
Target Start/End: Original strand, 5090615 - 5090673
Alignment:
| Q |
894 |
atctgaactctcaatatcggtgaggcataattttttgtcaaataattaaataaaacgta |
952 |
Q |
| |
|
||||| |||| |||||| ||||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
5090615 |
atctggactcacaatattggtgaggcacaattttatgtcaaataatcaaataaaacgta |
5090673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 906 - 954
Target Start/End: Original strand, 30710605 - 30710653
Alignment:
| Q |
906 |
aatatcggtgaggcataattttttgtcaaataattaaataaaacgtaca |
954 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30710605 |
aatatcggtgaggcataatttcttgtcaaataattaaataaaacgtaca |
30710653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 885 - 949
Target Start/End: Original strand, 8064304 - 8064369
Alignment:
| Q |
885 |
caagggcgtatctgaactctcaatatcggtgaggcataa-ttttttgtcaaataattaaataaaac |
949 |
Q |
| |
|
|||||||| ||||| |||| ||||||| ||||||| || |||||||||||||||||||||||||| |
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|
| T |
8064304 |
caagggcggatctggactcaaaatatcgatgaggcacaaattttttgtcaaataattaaataaaac |
8064369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 906 - 949
Target Start/End: Original strand, 17304305 - 17304349
Alignment:
| Q |
906 |
aatatcggtgaggcataat-tttttgtcaaataattaaataaaac |
949 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
17304305 |
aatatcggtgaggcacaatgtttttgtcaaataattaaataaaac |
17304349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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