View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_13 (Length: 574)
Name: NF20179_low_13
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_13 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 163 - 563
Target Start/End: Complemental strand, 18701527 - 18701127
Alignment:
| Q |
163 |
aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
18701527 |
aatctgcttattttgttctaaataatatttcagaaacacaataactcagagcgatatatagataccagagggaatattgtttcttaaggaatggcctgaa |
18701428 |
T |
|
| Q |
263 |
acaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgtttctgtaatggaaaaactaagattgtgatatttgatatag |
362 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
18701427 |
atagagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgtttttgtaatggaaaatctaagattgtgatatttgatatag |
18701328 |
T |
|
| Q |
363 |
gcagcaggactatgaaagccacatagagttggtgttggaacgttggtctttctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttgg |
462 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18701327 |
gcagcaggactatgaaagccacatagagtcggtgttagaacgttggtctttctcttgtgaggaagagaaatgagaaaaggggatggtttgtcgtccttgg |
18701228 |
T |
|
| Q |
463 |
ccaccgacgaaaagtatcaatgtgcatcaaggttctaccattaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatcaagtataatc |
562 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18701227 |
ccaccggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatcaagtataatc |
18701128 |
T |
|
| Q |
563 |
t |
563 |
Q |
| |
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| |
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|
| T |
18701127 |
t |
18701127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 18701687 - 18701578
Alignment:
| Q |
18 |
aaacaaccttaaagagtgaaaattggtgtcagtgtggagtaactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaa |
117 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18701687 |
aaacaaccttaaagagtgaaaattggtgtcaatgtggagtaactgccattagctaagatacacagagaggtttcctaatagttttaaatgtatgctacaa |
18701588 |
T |
|
| Q |
118 |
gaatttaatt |
127 |
Q |
| |
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||||| |||| |
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| T |
18701587 |
gaattcaatt |
18701578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 213 - 563
Target Start/End: Original strand, 40801555 - 40801905
Alignment:
| Q |
213 |
gcaatatatagataccagagggattatagtttcttaaggaatggcctgaaacaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801555 |
gcaatatatagataccagagggattatagtttcttaaggaatggcctgaaacagagtaataacaaaaatatgaagaaatacataatatcaacggagcatc |
40801654 |
T |
|
| Q |
313 |
acaacaatgtttctgtaatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaacgttggtctt |
412 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801655 |
acaacaatgtttttgtaatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaacgttggtctt |
40801754 |
T |
|
| Q |
413 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
512 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801755 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtcattggccatcggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
40801854 |
T |
|
| Q |
513 |
agaaagtgttcaaaatgattttctatttcatactatgatcaagtataatct |
563 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801855 |
aaaaagtgttcaaaatgattttctatttcatactatgatcaagtataatct |
40801905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 40801290 - 40801409
Alignment:
| Q |
18 |
aaacaaccttaaagagtgaaaattggtgtcagtgtggagtaactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40801290 |
aaacaaccttaaagagtgaaaattggtgtcaatgtggagtaactgccatcaactaagatacacagagaggtttcttaatagttttaaatgtatgctacaa |
40801389 |
T |
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| Q |
118 |
gaatttaattgtaacaaggg |
137 |
Q |
| |
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|||||||||||||||||||| |
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| T |
40801390 |
gaatttaattgtaacaaggg |
40801409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 40801438 - 40801480
Alignment:
| Q |
95 |
atagttttaaatgtatgctacaagaatttaattgtaacaaggg |
137 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
40801438 |
atagttttaaatgtatactacaagaatttaattgtaacaaggg |
40801480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 40801509 - 40801551
Alignment:
| Q |
95 |
atagttttaaatgtatgctacaagaatttaattgtaacaaggg |
137 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40801509 |
atagttttaaatgtatactacaagaatttaattgtaacaaggg |
40801551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 413 - 563
Target Start/End: Original strand, 23126087 - 23126237
Alignment:
| Q |
413 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23126087 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
23126186 |
T |
|
| Q |
513 |
agaaagtgttcaaaatgattttctatttcatactatgatcaagtataatct |
563 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23126187 |
agaaagtattcaaaatgattttctatttcatattatgatcaagtataatct |
23126237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 402
Target Start/End: Complemental strand, 5461196 - 5461023
Alignment:
| Q |
229 |
agagggattatagtttcttaaggaatggcctgaaacaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgtttctgt |
328 |
Q |
| |
|
||||||||||| ||||||| ||||||| || ||||||||| || | ||||||| |||||||| | |||| ||||||| | |||||| |||| ||| |
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| T |
5461196 |
agagggattatggtttcttgaggaatgtcccgaaacaaagagatcaaaaaaataggaagaaatttggattatcgacggagctttgcaacaacgtttttgt |
5461097 |
T |
|
| Q |
329 |
aatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaa |
402 |
Q |
| |
|
|||||||||||| |||||| ||||| || || | ||| ||| ||||| ||||| || | ||| |||||||||| |
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|
| T |
5461096 |
aatggaaaaactgagattgggatatatggtacatgcaacagtactataaaagcagcacatagtcggtgttggaa |
5461023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 552
Target Start/End: Original strand, 29633943 - 29633992
Alignment:
| Q |
503 |
ttaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatc |
552 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| ||||| |||| |
|
|
| T |
29633943 |
ttaatcaagaagaaagtgctcaaaagcattttctatttcctactacgatc |
29633992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 552
Target Start/End: Original strand, 40389878 - 40389927
Alignment:
| Q |
503 |
ttaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatc |
552 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| ||||| |||| |
|
|
| T |
40389878 |
ttaatcaagaagaaagtgctcaaaagcattttctatttcctactacgatc |
40389927 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 163 - 294
Target Start/End: Complemental strand, 24866657 - 24866526
Alignment:
| Q |
163 |
aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa |
262 |
Q |
| |
|
||||| |||||||| |||||| |||||||||| ||||||||||||| | |||||||| |||||| ||||||||||| |||| || ||||||||| | | |
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|
| T |
24866657 |
aatcttcttattttattctaactaatatttcaaaaacacaataacttatagcaatatgtagatatgagagggattatggttttttgaggaatggctggga |
24866558 |
T |
|
| Q |
263 |
acaaagtaataacaaaaatatgaagaaataca |
294 |
Q |
| |
|
||| || |||||||| |||||| |||||||| |
|
|
| T |
24866557 |
acatagagataacaaatatatgatgaaataca |
24866526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 551
Target Start/End: Complemental strand, 24864555 - 24864512
Alignment:
| Q |
508 |
caagaagaaagtgttcaaaatgattttctatttcatactatgat |
551 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
24864555 |
caagaagaaagtgctcaaaaggattttctatttcttactatgat |
24864512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 24864685 - 24864640
Alignment:
| Q |
459 |
ttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccatta |
505 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
24864685 |
ttggccaccgacgaaa-gtaacaatttgcatcaaggttctaccatta |
24864640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 163 - 324
Target Start/End: Complemental strand, 50379561 - 50379400
Alignment:
| Q |
163 |
aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa |
262 |
Q |
| |
|
||||| |||||||| |||||| |||||||||| ||||| | ||| ||||||| |||||| | | ||||| |||| || |||| |||||||| ||||| |
|
|
| T |
50379561 |
aatcttcttattttattctaactaatatttcaaaaacaaagtaattgagagcggtatataaacatgagaggtattagggtatcttgaggaatggtctgaa |
50379462 |
T |
|
| Q |
263 |
acaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgttt |
324 |
Q |
| |
|
||| | |||||||||||| |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
50379461 |
acagtgagataacaaaaataggaagaaatcgggaatatcaacggagcatcgcaacaatgttt |
50379400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 547
Target Start/End: Original strand, 83654 - 83698
Alignment:
| Q |
503 |
ttaatcaagaagaaagtgttcaaaatgattttctatttcatacta |
547 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| ||||| |
|
|
| T |
83654 |
ttaatcaagaagaaagtgctcaaaagcattttctatttcctacta |
83698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 448
Target Start/End: Complemental strand, 6508122 - 6508037
Alignment:
| Q |
361 |
aggcagcaggactatgaaagccacatagagttggtgttggaacgttggtctttctcctttgaggaagagaaatgagaaaaggggaagg |
448 |
Q |
| |
|
||||||||| ||| ||| |||| |||||||| ||||| | || |||||||||| |||| ||| |||||||||| |||||||||||| |
|
|
| T |
6508122 |
aggcagcagtactgtgacagccgcatagagtcggtgtggaaa--ttggtctttcgccttcgagatagagaaatgaaaaaaggggaagg |
6508037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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