View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_14 (Length: 559)
Name: NF20179_low_14
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Original strand, 7599240 - 7599768
Alignment:
| Q |
18 |
tgaggatgttagggaaaagaatgggagggtgtttgttcattgttgtcaaggggtgtcgaggtcgacgtctcttgttattgcttatcttatgtggagggaa |
117 |
Q |
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| T |
7599240 |
tgaggatgttagggaaaagaatgggagggtgtttgttcattgttgtcaaggggtgtcgaggtcgacgtctcttgttattgcttatcttatgtggagggaa |
7599339 |
T |
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| Q |
118 |
ggacagagttttgatgatgcttttcagtttgtgaaggcggcgaggggtattgctgatccgaatatgggtttcgcttgtcagttgttacagtgtcagaaaa |
217 |
Q |
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| T |
7599340 |
ggacagagttttgatgatgcttttcagtttgtgaaggcggcgaggggtattgctgatccgaatatgggtttcgcttgtcagttgttacagtgtcagaaaa |
7599439 |
T |
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| Q |
218 |
gggttcatgcggttcctcttagtccgagctcgttgttgagaatgtataggattgctcctcactcgccgtatgatcctttgcatcttgttccgaagatgtt |
317 |
Q |
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| T |
7599440 |
gggttcatgcagttcctcttagtccgagctcgttgttgagaatgtataggattgctcctcactcgccgtatgatcctttgcatcttgttccgaagatgtt |
7599539 |
T |
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| Q |
318 |
gacggatccgtctttgtctgctttggattctaggggtgcgtttattgtgcacattccttcggcgttatatgtttggattggtaagtattgtgcggctatc |
417 |
Q |
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| T |
7599540 |
gacggatccgtctttgtctgctttggattctaggggtgcgtttattgtgcacattccttcggcattatatgtttggattggtaagtattgtgcggctatc |
7599639 |
T |
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| Q |
418 |
atggaaagggatgctagaggggctgcggatcagattgtccggtatgagagagtgcaaggatcgattatcatgattaaggaaggtgaggaaccaccttcgt |
517 |
Q |
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| T |
7599640 |
atggaaagggatgctagaggggctgcggatcagattgtccggtatgagagagtgcaaggatcgattatcatgattaaggaaggtgaggaaccaccttcat |
7599739 |
T |
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| Q |
518 |
tttgggatgctttttcgaagtttttgcct |
546 |
Q |
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| T |
7599740 |
tttgggatgctttttcgaagtttttgcct |
7599768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 37347322 - 37347415
Alignment:
| Q |
50 |
ttgttcattgttgtcaaggggtgtcgaggtcgacgtctcttgttattgcttatcttatgtggagggaaggacagagttttgatgatgcttttca |
143 |
Q |
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| T |
37347322 |
ttgttcattgttgtcaaggtgtttctagatcaacctctttggttattgcttatcttatgtggagagaaggacaaagctttgaagatgcttttca |
37347415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 39220151 - 39220250
Alignment:
| Q |
50 |
ttgttcattgttgtcaaggggtgtcgaggtcgacgtctcttgttattgcttatcttatgtggagggaaggacagagttttgatgatgcttttcagtttgt |
149 |
Q |
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| T |
39220151 |
ttgttcattgttgtcaaggggtttcgcgatcaacggctttggtgatagcttatctcatgtggaggaagggacagagctttgaagatgcttttcagtttgt |
39220250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 45146456 - 45146402
Alignment:
| Q |
89 |
ttgttattgcttatcttatgtggagggaaggacagagttttgatgatgcttttca |
143 |
Q |
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| T |
45146456 |
ttgtcattgcttatcttatgtggagaaaaggacagagctttaaggatgcttttca |
45146402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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