View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_17 (Length: 518)
Name: NF20179_low_17
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Original strand, 40644238 - 40644735
Alignment:
| Q |
8 |
aaaaagtcaataaggaaagcatatatattcactccttgttgaaaactataagcaaatgccttggttatgaacttatgatgtatcaggaactgcagaatat |
107 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40644238 |
aaaaagtcaataaggaaagcatatatatacactccttgttgaaaactataagcaaatgccttggttatgaacttatgatgtatcaggaattgcagaatat |
40644337 |
T |
|
| Q |
108 |
atcctcgnnnnnnnggttcaagtcaccattgtcaacatcgaatttcaacaatttctccatggcgtcctgcatgaagcatgtacatgtgagtaaatgatat |
207 |
Q |
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| T |
40644338 |
atcctcgaaaaaaaggttcaagtcaccattgtcaacatcgaatttcaacaatttctccatagcgtcctgcatgaaacatgtgtatgtgagtaaatgatat |
40644437 |
T |
|
| Q |
208 |
ccaaaatgtaacaagtatctttaatttgacttttgaaactgaaatgataccttgtattcatcatcttgagctgagatgttctcattgcataacctctcaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40644438 |
ccaaaatgtaacaagtatctttaatttgacttttgaaactgaaatgataccttgtattcatcatcttgagctgagatgttctcattgcataacctctcaa |
40644537 |
T |
|
| Q |
308 |
cacaattgttttttgaaacagcgtccaacacaactgctgctctttttataatttcgtctggcacgcctgcatgaatgatgcagct---tgatctatcaga |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
40644538 |
cacaattgttttttgaaacagcgtccaacacaactgctgctctttttataatttcgtctggcacgcctgcataaatgatgcagcttgatgatctatcaga |
40644637 |
T |
|
| Q |
405 |
aactatgtggaaaaatcggactcaacatattcatcacattactaaaaaggtaaagtaaaataaattaaagaatatactgtgttcagtatcacacatac |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40644638 |
aactatgtggaaaaatcggactcaacatattcatcacattactaaaaaggtaaagtaaaataaattaaagaatatactgtgttcagtatcacacatac |
40644735 |
T |
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