View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_low_18 (Length: 516)

Name: NF20179_low_18
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_low_18
NF20179_low_18
[»] chr1 (10 HSPs)
chr1 (17-501)||(24697440-24697924)
chr1 (206-260)||(41516987-41517041)
chr1 (151-193)||(48548990-48549032)
chr1 (157-260)||(3016162-3016265)
chr1 (152-251)||(7524121-7524221)
chr1 (206-261)||(36413754-36413809)
chr1 (143-260)||(18325076-18325194)
chr1 (152-193)||(213258-213299)
chr1 (152-260)||(48635169-48635277)
chr1 (151-191)||(34915135-34915175)
[»] chr2 (8 HSPs)
chr2 (126-260)||(44439253-44439388)
chr2 (154-191)||(8800677-8800714)
chr2 (177-260)||(44147953-44148037)
chr2 (152-262)||(11510951-11511061)
chr2 (152-193)||(15220838-15220879)
chr2 (151-192)||(16518846-16518887)
chr2 (212-260)||(6767674-6767722)
chr2 (152-192)||(33047559-33047599)
[»] chr4 (4 HSPs)
chr4 (151-260)||(10185193-10185304)
chr4 (155-257)||(37561440-37561543)
chr4 (147-193)||(55927742-55927788)
chr4 (259-316)||(1099767-1099824)
[»] chr6 (9 HSPs)
chr6 (152-191)||(34620955-34620994)
chr6 (152-191)||(34748392-34748431)
chr6 (152-260)||(1485123-1485231)
chr6 (152-192)||(4910976-4911016)
chr6 (152-191)||(25195343-25195382)
chr6 (146-193)||(32888928-32888975)
chr6 (147-217)||(25388119-25388189)
chr6 (154-259)||(31305826-31305932)
chr6 (154-259)||(34026596-34026705)
[»] chr7 (3 HSPs)
chr7 (152-193)||(40561735-40561776)
chr7 (151-186)||(26975332-26975367)
chr7 (123-191)||(12306792-12306860)
[»] chr8 (7 HSPs)
chr8 (152-191)||(37684474-37684513)
chr8 (207-256)||(9051094-9051143)
chr8 (154-238)||(26100125-26100210)
chr8 (151-192)||(43492213-43492254)
chr8 (143-214)||(2764437-2764509)
chr8 (152-192)||(32101141-32101181)
chr8 (152-192)||(32927960-32928000)
[»] scaffold0361 (1 HSPs)
scaffold0361 (152-217)||(14091-14157)
[»] chr3 (2 HSPs)
chr3 (151-193)||(29475361-29475403)
chr3 (130-257)||(48089645-48089772)
[»] chr5 (2 HSPs)
chr5 (260-316)||(3043102-3043158)
chr5 (220-260)||(7328685-7328725)


Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Original strand, 24697440 - 24697924
Alignment:
Q  17 tgaacaattgtttgataaagggcatacaaaccaattcaccatctttccaggtacttgttattcaatataattccggttttgaatgaattgaattttgtta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24697440 tgaacaattgtttgataaagggcatacaaaccaattcaccatctttccaggtacttgttattcaatataattccggttttgaacgaattgaattttgtta 24697539  T
Q  117 agttggttctggctaaacgtgcgttaaatataatatgatttatgtttggatacgtttatgtaaaagtgagttgaacataaattggagagtaaatatcaat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24697540 agttggttctggctaaacgtgcgttaaatataatatgatttatgtttggatacgtttatgtaaaagtgagttgaacataaattggagactaaatatcaat 24697639  T
Q  217 tgcagaggcaaaagcttcaaattctaatttcaagttagaatcaaatcaattctactcgtaagcatctaaatatttcaaaaccaattctacatctctagaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697640 tgcagaggcaaaagcttcaaattctaatttcaagttagaatcaaaccaattctactcgtaagcatctaaatatttcaaaaccaattctacatctctagaa 24697739  T
Q  317 ctaaatttgcattcaaacattttctgctacagatgattgtaagatgtcagttgatacaccaaatcatcaagcaaccttatcactgcaatcaccatttgct 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24697740 ctaaatttgcattcaaacattttctgctacagatgattgtaagatgtcagttgatacaccaaatcatcaagcaaccttatccctgcaatcaccatttgct 24697839  T
Q  417 gccgagccacttaatcgatttgagctaggttttaaccagtctatggtaaatcttcttattaaagcaatccctttgatcatgtttt 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697840 gccgagccacttaatcgatttgagctaggttttaaccagtctatggtaaatcttcttattaaagcaatccctttgatcatgtttt 24697924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 41517041 - 41516987
Alignment:
Q  206 taaatatcaattgcagaggcaaaagcttcaaattctaatttcaagttagaatcaa 260  Q
    |||| |||||||| |||||||||| || |||||||||| ||||||||||||||||    
T  41517041 taaaaatcaattgaagaggcaaaaactccaaattctaacttcaagttagaatcaa 41516987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 48548990 - 48549032
Alignment:
Q  151 atgatttatgtttggatacgtttatgtaaaagtgagttgaaca 193  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  48548990 atgatttatgttttgatacatttatgtaaaagtgagttgaaca 48549032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 3016265 - 3016162
Alignment:
Q  157 tatgtttggatacgtttatgtaaaagtgagttgaa-cataaattggagagtaaatatcaattgcagaggcaaaagcttcaaattctaatttcaagttaga 255  Q
    ||||||||||||| || |||||||||||||||||| | ||||||   | ||||| |||||||  |||  |||||||| |||||||||| |||||| ||||    
T  3016265 tatgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaattctaagttcaag-taga 3016167  T
Q  256 atcaa 260  Q
    |||||    
T  3016166 atcaa 3016162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 7524221 - 7524121
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaac-ataaattggagagtaaatatcaattgcagaggcaaaagcttcaaattctaatttcaag 250  Q
    |||||| |||||||| || |||||||||||||||||||||| ||||||| | | ||||| |||||||  | |  |||||||| ||||| |||| ||||||    
T  7524221 tgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaatcctaacttcaag 7524122  T
Q  251 t 251  Q
    |    
T  7524121 t 7524121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 36413809 - 36413754
Alignment:
Q  206 taaatatcaattgcagaggcaaaagcttcaaattctaatttcaagttagaatcaaa 261  Q
    |||| |||||| | |||| ||||| ||||||||||||| |||||||||||||||||    
T  36413809 taaaaatcaatcgtagagccaaaaacttcaaattctaacttcaagttagaatcaaa 36413754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 260
Target Start/End: Original strand, 18325076 - 18325194
Alignment:
Q  143 aatataatatgatttatgtttggatacgtttatgtaaaagtgagttgaa-cataaattggagagtaaatatcaattgcagaggcaaaagcttcaaattct 241  Q
    |||||||  |||||||||| ||||||| || ||||||||||| ||||||  ||||||  |||  |||| |||||||| |||  ||||| || | ||||||    
T  18325076 aatataaagtgatttatgtatggatacattcatgtaaaagtgggttgaataataaatctgaggataaaaatcaattgtagaaacaaaaactcctaattct 18325175  T
Q  242 aatttcaagttagaatcaa 260  Q
     ||||||||||| ||||||    
T  18325176 gatttcaagttaaaatcaa 18325194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 213258 - 213299
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaaca 193  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  213258 tgatttatgtttggatacatgcatgtaaaagtgagttgaaca 213299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 48635169 - 48635277
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaac-ataaattggagagtaaatatcaattgcagaggcaaaagcttcaaattctaatttcaag 250  Q
    |||||||||||||||||| || ||||||| ||| ||| ||| |||||||  |  ||||| |||||||  |||| ||||||||||||||||||   | |||    
T  48635169 tgatttatgtttggatacattcatgtaaa-gtgggtttaacgataaattcaatggtaaaaatcaattatagagacaaaagcttcaaattctaggctgaag 48635267  T
Q  251 ttagaatcaa 260  Q
    ||||||||||    
T  48635268 ttagaatcaa 48635277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 34915175 - 34915135
Alignment:
Q  151 atgatttatgtttggatacgtttatgtaaaagtgagttgaa 191  Q
    |||||||||||||| |||| || ||||||||||||||||||    
T  34915175 atgatttatgtttgaatacattcatgtaaaagtgagttgaa 34915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 260
Target Start/End: Complemental strand, 44439388 - 44439253
Alignment:
Q  126 tggctaaacgtgcgttaaatataatatgatttatgtttggatacgtttatgtaaaagtgagttgaac-ataaattggagagtaaatatcaattgcagagg 224  Q
    |||||| | ||| ||||||| |||  ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| || || |||||||  |||      
T  44439388 tggctataagtgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaat 44439289  T
Q  225 caaaagcttcaaattctaatttcaagttagaatcaa 260  Q
    |||||||| |||||| ||  ||||||||||||||||    
T  44439288 caaaagctccaaattttagcttcaagttagaatcaa 44439253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 8800677 - 8800714
Alignment:
Q  154 atttatgtttggatacgtttatgtaaaagtgagttgaa 191  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  8800677 atttatgtttggatacgttcatgtaaaagtgagttgaa 8800714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 44147953 - 44148037
Alignment:
Q  177 taaaagtgagttgaac-ataaattggagagtaaatatcaattgcagaggcaaaagcttcaaattctaatttcaagttagaatcaa 260  Q
    |||||||||||||||| ||||||| || |||||| ||||||||| |||  |||||||  ||| ||||| ||||||||| ||||||    
T  44147953 taaaagtgagttgaacaataaatttgaaagtaaaaatcaattgcggagataaaagctctaaactctaacttcaagttataatcaa 44148037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 11511061 - 11510951
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaaca-taaattggagagtaaatatcaattgcagaggcaaaagcttcaaattctaatttcaag 250  Q
    |||||||||||| | ||| || || |||||||| |||||||| |||||| |||  |||| || ||||| |||||||||| || |||||||||  ||||||    
T  11511061 tgatttatgtttagctacattcatataaaagtgggttgaacaataaatttgaggttaaa-ataaattgtagaggcaaaaactccaaattctagcttcaag 11510963  T
Q  251 ttagaatcaaat 262  Q
     |||||||||||    
T  11510962 atagaatcaaat 11510951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 15220838 - 15220879
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaaca 193  Q
    |||||||||||||||||| || |||| |||||||||||||||    
T  15220838 tgatttatgtttggatacattcatgttaaagtgagttgaaca 15220879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 16518887 - 16518846
Alignment:
Q  151 atgatttatgtttggatacgtttatgtaaaagtgagttgaac 192  Q
    ||||||| ||||||||||| || |||||||||||||||||||    
T  16518887 atgatttgtgtttggatacattcatgtaaaagtgagttgaac 16518846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 6767722 - 6767674
Alignment:
Q  212 tcaattgcagaggcaaaagcttcaaattctaatttcaagttagaatcaa 260  Q
    ||||||| ||| ||||||||| |||||||||  ||||||||||||||||    
T  6767722 tcaattgtagaagcaaaagctccaaattctagcttcaagttagaatcaa 6767674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 33047559 - 33047599
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaac 192  Q
    |||||| ||||||||||| |||||||||||||||| |||||    
T  33047559 tgatttgtgtttggatacatttatgtaaaagtgaggtgaac 33047599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 10185304 - 10185193
Alignment:
Q  151 atgatttatgttt-ggatacgtttatgtaaaagtgagttgaaca-taaattggagagtaaatatcaattgcagaggcaaaagcttcaaattctaatttca 248  Q
    ||||||||||||| |||||| || ||||||||||||||| |||| |||||| ||| ||||| |||||||  |||  |||||||||||| |||||  ||||    
T  10185304 atgatttatgttttggatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagcttcaatttctaccttca 10185205  T
Q  249 agttagaatcaa 260  Q
    ||||||||||||    
T  10185204 agttagaatcaa 10185193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 37561543 - 37561440
Alignment:
Q  155 tttatgtttggatacgtttatgtaaaagtgagttgaac-ataaattggagagtaaatatcaattgcagaggcaaaagcttcaaattctaatttcaagtta 253  Q
    |||||||||| |||| ||||  |||||||  ||||||| ||||||| |||  ||||  ||||||| |||||||||||||||||||||||||||||||| |    
T  37561543 tttatgtttgaatacatttacataaaagtaggttgaacgataaatttgaggttaaaattcaattgtagaggcaaaagcttcaaattctaatttcaagtca 37561444  T
Q  254 gaat 257  Q
    ||||    
T  37561443 gaat 37561440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 55927742 - 55927788
Alignment:
Q  147 taatatgatttatgtttggatacgtttatgtaaaagtgagttgaaca 193  Q
    |||| |||||||||||||||||| || |||||||||||| |||||||    
T  55927742 taatgtgatttatgtttggatacattcatgtaaaagtgacttgaaca 55927788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 1099824 - 1099767
Alignment:
Q  259 aaatcaattctactcgtaagcatctaaatatttcaaaaccaattctacatctctagaa 316  Q
    ||||||||||| ||||  |||| | ||||||||||||| ||||||| |||||||||||    
T  1099824 aaatcaattctgctcgagagcaaccaaatatttcaaaatcaattctgcatctctagaa 1099767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 34620994 - 34620955
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaa 191  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  34620994 tgatttatgtttggatacatttatgtaaaagtgagttgaa 34620955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 34748431 - 34748392
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaa 191  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  34748431 tgatttatgtttggatacatttatgtaaaagtgagttgaa 34748392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 1485123 - 1485231
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaac-ataaattggagagtaaatatcaattgcagaggcaaaagcttcaaattctaatttcaag 250  Q
    ||||||| ||||||||||  ||||||||||||||||||||| ||||||| ||| || || |||||||  |||  |||||||| ||| |||||  ||||||    
T  1485123 tgatttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaag 1485222  T
Q  251 ttagaatcaa 260  Q
     |||||||||    
T  1485223 -tagaatcaa 1485231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 4911016 - 4910976
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaac 192  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  4911016 tgatttatgtttggatacatttatgtaaaagtgagtcgaac 4910976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 25195343 - 25195382
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaa 191  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  25195343 tgatttgtgtttggatacatttatgtaaaagtgagttgaa 25195382  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 32888928 - 32888975
Alignment:
Q  146 ataatatgatttatgtttggatacgtttatgtaaaagtgagttgaaca 193  Q
    |||| |||||||||||||| |||  |||||||||||||||||||||||    
T  32888928 ataaaatgatttatgtttgaatatatttatgtaaaagtgagttgaaca 32888975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 25388189 - 25388119
Alignment:
Q  147 taatatgatttatgtttggatacgtttatgtaaaagtgagttgaacataaattggagagtaaatatcaatt 217  Q
    ||||||||||||  ||||||||  ||||||||||||||||||||  ||||||| ||| || || |||||||    
T  25388189 taatatgatttacatttggatatatttatgtaaaagtgagttgacaataaatttgagtgtcaaaatcaatt 25388119  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 31305826 - 31305932
Alignment:
Q  154 atttatgtttggatacgtttatgtaaaagtgagttgaac-ataaattggagagtaaatatcaattgcagaggcaaaagcttcaaattctaatttcaagtt 252  Q
    |||||||||||||||  || ||||||||||||||||| | ||||||| ||| ||| | |||||||  |||  |||||||| ||| || ||  ||||||||    
T  31305826 atttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaatcaaaagctccaatttttagcttcaagtt 31305925  T
Q  253 agaatca 259  Q
    |||||||    
T  31305926 agaatca 31305932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 34026596 - 34026705
Alignment:
Q  154 atttatgtttggatacgttt--atgtaaaagtgagttgaaca-taaattggagagtaaatatcaattgcagaggc-aaaagcttcaaattctaatttcaa 249  Q
    |||||||||||||| ||| |  |||||||| ||||||||| | | ||||  || ||||| |||||||| ||| || ||||| |||||||||||| |||||    
T  34026596 atttatgtttggatgcgtattcatgtaaaaatgagttgaataattaatttaagtgtaaaaatcaattgtagaagctaaaagtttcaaattctaaattcaa 34026695  T
Q  250 gttagaatca 259  Q
    ||||||||||    
T  34026696 gttagaatca 34026705  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 40561735 - 40561776
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaaca 193  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  40561735 tgatttatgtttggatacattcatgtaaaagtgagttgaaca 40561776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 186
Target Start/End: Original strand, 26975332 - 26975367
Alignment:
Q  151 atgatttatgtttggatacgtttatgtaaaagtgag 186  Q
    |||||||||||||| |||||||||||||||||||||    
T  26975332 atgatttatgtttgaatacgtttatgtaaaagtgag 26975367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 12306860 - 12306792
Alignment:
Q  123 ttctggctaaacgtgcgttaaatataatatgatttatgtttggatacgtttatgtaaaagtgagttgaa 191  Q
    ||||||||||| ||| ||| || ||||  |||||||||||||| ||  || ||||||||||||||||||    
T  12306860 ttctggctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttgaa 12306792  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 37684513 - 37684474
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaa 191  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  37684513 tgatttgtgtttggatacatttatgtaaaagtgagttgaa 37684474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 9051143 - 9051094
Alignment:
Q  207 aaatatcaattgcagaggcaaaagcttcaaattctaatttcaagttagaa 256  Q
    ||||||||||||  ||||||||| || ||||||||| |||||||||||||    
T  9051143 aaatatcaattgttgaggcaaaaactccaaattctagtttcaagttagaa 9051094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 26100125 - 26100210
Alignment:
Q  154 atttatgtttggatacgtttatgtaaaagtgagttgaa-cataaattggagagtaaatatcaattgcagaggcaaaagcttcaaat 238  Q
    |||| ||||||||| | ||||||||||||||||||||| |||||||| | | ||||| |||||||  |||  |||||||| |||||    
T  26100125 atttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaat 26100210  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 43492213 - 43492254
Alignment:
Q  151 atgatttatgtttggatacgtttatgtaaaagtgagttgaac 192  Q
    ||||||||||||||||||| || |||||||||| ||||||||    
T  43492213 atgatttatgtttggatacattcatgtaaaagtaagttgaac 43492254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 2764437 - 2764509
Alignment:
Q  143 aatataatatgatttatgtttggatacgtttatgtaaaagtgagttgaa-cataaattggagagtaaatatca 214  Q
    |||||||  |||||||| ||||||||| || | |||||||||||||||| |||||||| || |||||| ||||    
T  2764437 aatataaagtgatttatatttggatacattcacgtaaaagtgagttgaaccataaattcgaaagtaaaaatca 2764509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 32101181 - 32101141
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaac 192  Q
    |||||| ||| ||||||| ||||||||||||||||||||||    
T  32101181 tgatttgtgtgtggatacatttatgtaaaagtgagttgaac 32101141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 32928000 - 32927960
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttgaac 192  Q
    |||||| ||||||||||| || |||||||||||||||||||    
T  32928000 tgatttgtgtttggatacattcatgtaaaagtgagttgaac 32927960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 14091 - 14157
Alignment:
Q  152 tgatttatgtttggatacgtttatgtaaaagtgagttg-aacataaattggagagtaaatatcaatt 217  Q
    |||||||||||||||||| || |||| ||||||||||| || ||||||| ||| ||||| |||||||    
T  14091 tgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaatt 14157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 29475361 - 29475403
Alignment:
Q  151 atgatttatgtttggatacgtttatgtaaaagtgagttgaaca 193  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||    
T  29475361 atgatttatgttttgatacgtttatgtcaaactgagttgaaca 29475403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 257
Target Start/End: Original strand, 48089645 - 48089772
Alignment:
Q  130 taaacgtgcgttaaatataatatgatttatgtttggatacgtttatgtaaaagtgagttgaaca-taaattggagagtaaatatcaattgcagaggcaaa 228  Q
    |||| ||| ||| ||| ||| |||||||||| |||||||| |||   |||| ||| |||||||| ||| || |||  |||| |||| ||| |||||||||    
T  48089645 taaaagtgagttgaatgtaaaatgatttatgattggatacatttgcataaa-gtgggttgaacaataactttgaggctaaaaatcatttgtagaggcaaa 48089743  T
Q  229 agcttcaaattctaatttcaagttagaat 257  Q
    |||||||| |||||| ||||| |||||||    
T  48089744 agcttcaagttctaacttcaaattagaat 48089772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 3043102 - 3043158
Alignment:
Q  260 aatcaattctactcgtaagcatctaaatatttcaaaaccaattctacatctctagaa 316  Q
    ||||||||||| || |||||| ||||| || |||||| |||||||||| ||||||||    
T  3043102 aatcaattctattcttaagcaactaaacatgtcaaaatcaattctacacctctagaa 3043158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 7328685 - 7328725
Alignment:
Q  220 agaggcaaaagcttcaaattctaatttcaagttagaatcaa 260  Q
    ||||||||||| |||||||||||  ||||||||||||||||    
T  7328685 agaggcaaaagtttcaaattctagcttcaagttagaatcaa 7328725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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