View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_19 (Length: 513)
Name: NF20179_low_19
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_19 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 119 - 310
Target Start/End: Original strand, 49456768 - 49456959
Alignment:
| Q |
119 |
tataatattctaaaaaagaatatgagactactacacaatcattatcaagtaccaatgcaacactataaactaacctgatgatagccaggggccaagttat |
218 |
Q |
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| T |
49456768 |
tataatattctaaaaaagaatatgagactactacacaatcattatcaagtaccaaggcaacactataaactaacctgatgatagccaggggccaagttat |
49456867 |
T |
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| Q |
219 |
gaataacttgaaacacagttggacaaccttcaactggtgacatttgcagaagctcagaccacctttgagacaaaatttaaatttttcttatt |
310 |
Q |
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| T |
49456868 |
gaataacttgaaacacagttggacaaccttcaactggtgacatttgcagaagctcagaccacctttgagacaaaatttaaatttttcttatt |
49456959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 377 - 492
Target Start/End: Original strand, 49457026 - 49457141
Alignment:
| Q |
377 |
tagagtttttgaaccaaaaaatcaaaacttttagaattgaagtgtaatgatttattgatnnnnnnntataccttgtgaaagaaccactgagataaacagt |
476 |
Q |
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| T |
49457026 |
tagagtttttgaaccaaaaaatcaaaacttttagaattgaagtgtaatgatttattgataaaaatatataccttgtgaaagaaccactgagataaacagt |
49457125 |
T |
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| Q |
477 |
tcttcccccatatggc |
492 |
Q |
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| T |
49457126 |
tcttcccccatatggc |
49457141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 49456667 - 49456723
Alignment:
| Q |
14 |
cacagagctcattgccgtcactagttgtctgccagagaaacactttgccaccaaaac |
70 |
Q |
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| T |
49456667 |
cacagagctcattgccgtcgctagttgtctgccagagaaacactttgccaccaaaac |
49456723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0392 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 284
Target Start/End: Complemental strand, 2331 - 2230
Alignment:
| Q |
183 |
ataaactaacctgatgatagccaggggccaagttatgaataacttgaaacacagttggacaaccttcaactggtgacatttgcagaagctcagaccacct |
282 |
Q |
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||||||| |||||||| || ||||||| ||| | | ||||||||||||||| ||||| |||||||| || || |||||| ||| ||||||||||||||| |
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| T |
2331 |
ataaactgacctgatggtaaccagggggcaatctgtaaataacttgaaacactgttgggcaaccttccaccggagacattggcaaaagctcagaccacct |
2232 |
T |
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| Q |
283 |
tt |
284 |
Q |
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|| |
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| T |
2231 |
tt |
2230 |
T |
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