View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_low_2 (Length: 893)
Name: NF20179_low_2
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 809; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 809; E-Value: 0
Query Start/End: Original strand, 1 - 888
Target Start/End: Original strand, 54904691 - 54905578
Alignment:
| Q |
1 |
cccctttaacttcgaccgtatttgcaaaatggaggcgatcaaatattttcatgataaactagtctgagatttctttactaaagggaaagttatatataat |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54904691 |
cccctttaacttcgacagtatttgcaaaatggaggcgatcaaatattttcatgataaactagtctgagatttctttacaaaagggaaagttatatataat |
54904790 |
T |
|
| Q |
101 |
ttgtacctgcaaatggctggatacattttcccttgtaagtccttcaacattcatcaagtcaagtattttcttaggcgaagcctctgcaataacagatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54904791 |
ttgtacctgcaaatggctggatacattttcccttgtaagtccttcaacattcatcaagtcaagtattttcttaggcgaagcctctgcaataacagttgaa |
54904890 |
T |
|
| Q |
201 |
gaaactacatattaggaacaataatatccatatttaacaatcattcatcaaattagcaaagtnnnnnnnnntatatcattgtcacataaactcactgtca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54904891 |
gaaactacatattaggaacaataatatccatatttaacaatcattcatcaaattagcaaagtaaaaaaaaaaatatcattgtcacataaactcactgtca |
54904990 |
T |
|
| Q |
301 |
aggccgacatgattaactgcagaaacaaattttcgatgcaactcatgatcccaaactaaacgaagcttcttttgagtcgaacatttctcatcagtatctt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
54904991 |
aggccgacatgattaactgcagaaacaaattttcgatgcaactcatgatcccaaactaaacgaggcttctttcgagtcgaacatttctcatcattatctt |
54905090 |
T |
|
| Q |
401 |
gttctgcttcttcctcctcagtttgttcctttctttttcgtccatgcattttattcttgttagcaatattttcagatgaggtgtcttgaccatatacccc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54905091 |
gttctgcttcttcctcctcagtttgttcctttctttttcgtccatgcattttattcttgttagcaatattttcagatgaggtgtcttgaccatatacccc |
54905190 |
T |
|
| Q |
501 |
atcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgccatatgctcttaagctcttccattcggatcggtttcact |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54905191 |
atcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgccatatgctcttaagctcttccattcggatcggtttcact |
54905290 |
T |
|
| Q |
601 |
agatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaacactatatatcacacacaaaaaatcgtcacttaga |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54905291 |
agatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaacactatatatcacacacaaaaaatcgtcacttaga |
54905390 |
T |
|
| Q |
701 |
tactatctgaataaaagaagtgtatataaattaggtaaacaatacagattttaagacaaaggtgtgtgagcttactgatgaaaggtaaatccatttcaag |
800 |
Q |
| |
|
||| ||||||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54905391 |
tacaatctgaatataagaagtggatcttaattaggtaaacaatacagattttaagacaaaggtgtgtgagcttactgatgaaaggtaaatccatttcaag |
54905490 |
T |
|
| Q |
801 |
tccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaacatatccttcttttctctc |
888 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54905491 |
tccaacttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaacatatccttcttttctctc |
54905578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 278 - 875
Target Start/End: Original strand, 54888903 - 54889516
Alignment:
| Q |
278 |
attgtcacataaactcactgtcaaggccgacatgattaactgcagaaacaaattttcgatgcaactcatgatcccaaactaaacgaagcttcttttgagt |
377 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| ||||| ||| ||||||||| ||||| |||| |||||||||||||||| ||||||| |||| |
|
|
| T |
54888903 |
attgtcacataaactcactatcaaggccgagttgactaactatagatacaaattttttatgcagttcatcatcccaaactaaacgaggcttcttccgagt |
54889002 |
T |
|
| Q |
378 |
cgaacatttctcatcagtatcttgttctgcttcttcctcctc---------------agtttgttcctttctttttcgtccatgcattttattcttgtta |
462 |
Q |
| |
|
||| | || ||||||| |||||| |||||||||||| || || | ||||||||||| ||||| ||||| | |||||||| ||||| |
|
|
| T |
54889003 |
cgagcgttcctcatcattatcttcttctgcttcttcttcttcctcttcttcatcttcactttgttcctttattttttgtccacgggttttattcctgtta |
54889102 |
T |
|
| Q |
463 |
gcaatattttcagatgaggtgtcttgaccatataccccatcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgcc |
562 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54889103 |
gcaatattttcagatgaggtgtcttgactacatatcccatcagtaatgatacctttattccgatccttgctttcaatcttctttctcactacatgttgcc |
54889202 |
T |
|
| Q |
563 |
atatgctcttaagctcttccattcggatcggtttcactagatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactga |
662 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||||||||||| |||||| || | || |||| ||||||||| ||||| ||||||||||| |||| |
|
|
| T |
54889203 |
atatgttcttaagctcttccaatcggattggtttcactagatagtcgcaagcgcctttcatcacacctttcatcaccctctctctatcatcatttcctga |
54889302 |
T |
|
| Q |
663 |
caacactatatatcacacacaaaaaatcgtcactt--agatactatctgaataaaagaagtgtatataaattaggtaaacaatacagattttaagacaaa |
760 |
Q |
| |
|
||||||||||| |||| | |||||||| |||||| ||| |||||||||||| |||||||| || | | |||| | || |||| | || ||| ||||| |
|
|
| T |
54889303 |
caacactatatcacaca-aaaaaaaatcatcacttaaagacactatctgaatataagaagtgaatcttagttagctgaataataaacatgctaaaacaaa |
54889401 |
T |
|
| Q |
761 |
ggtgtgtgagcttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattac |
860 |
Q |
| |
|
||| |||||||||||||||||| |||| || |||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
54889402 |
ggtatgtgagcttactgatgaagggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcatgcttacatcactaattac |
54889501 |
T |
|
| Q |
861 |
taggtcaaacatatc |
875 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
54889502 |
aaggtcaaacatatc |
54889516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 277 - 872
Target Start/End: Original strand, 54894523 - 54895136
Alignment:
| Q |
277 |
cattgtcacataaactcactgtcaaggccgacatgattaactgcagaaacaaattttcgatgcaactcatgatcccaaactaaacgaagcttcttttgag |
376 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||||| ||||||||||||| ||||||||| | ||||||||| ||||| ||||||| ||| |
|
|
| T |
54894523 |
cattgtcatataaactcactgtcaaggccaagcagattaactatagaaacaaattttttatgcaactcgttatcccaaacaaaacgcggcttcttccgag |
54894622 |
T |
|
| Q |
377 |
tcgaacatttctcatcagtatctt-----gt-tctgcttcttcctcctcagtttgttcctttctttttcgtccatgcattttattcttgttagcaatatt |
470 |
Q |
| |
|
| || || ||| ||| | |||| || |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| |||||| |
|
|
| T |
54894623 |
ttgagtgttcctcgtcattctcttcatcagtatctgcttcttcctcctcactttgttcctttctttttcgtccatgcgttttattcttcttaggaatatt |
54894722 |
T |
|
| Q |
471 |
ttcagatgaggtgtcttgaccatataccccatcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgccatatgctc |
570 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || |
|
|
| T |
54894723 |
ttcagatgaggtgtcttgaccagataccccatcactaatgataccttgattttgatccttgctttcaatcttttttctcactacatgttgccatatgttc |
54894822 |
T |
|
| Q |
571 |
ttaagctcttccattcggatcggtttcactagatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaacacta |
670 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||| |||||| || | || |||| ||||||||| | ||| ||||||||| | |||||||||||| |
|
|
| T |
54894823 |
ttaagctcctccaatcggatcggtttgactagatagtcgcaagcgcctttcatcacacctttcatcaccctttctctatcatcatgtcctgacaacacta |
54894922 |
T |
|
| Q |
671 |
tatatcac------acacaaaaaatcgtcactt--agatactatctgaataaaagaagtgtatataaattaggtaaacaatacagattttaagaca---- |
758 |
Q |
| |
|
||| ||| | | |||||||| |||||| |||| |||| |||||| |||||||| || | |||||| | || |||||| || |||||||| |
|
|
| T |
54894923 |
tatcacaccaatagaaaaaaaaaatcatcacttaaagattctatatgaatataagaagtggatcttaattagctgaataatacacatgttaagacaattt |
54895022 |
T |
|
| Q |
759 |
aaggtgtgtgagcttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaatt |
858 |
Q |
| |
|
||||| ||| |||||||| |||||||| | ||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||| | |||||||||||| |
|
|
| T |
54895023 |
aaggtttgttagcttactaatgaaaggcaggtccatctcaagtccaacttgctcaaggagcttgaaaccatccatttctggcatgtttacatcactaatt |
54895122 |
T |
|
| Q |
859 |
actaggtcaaacat |
872 |
Q |
| |
|
| || |||||||| |
|
|
| T |
54895123 |
ataagatcaaacat |
54895136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 54894223 - 54894455
Alignment:
| Q |
15 |
accgtatttgcaaaatggaggcgatcaaatattttcatgataaactagtctgagatttctttactaaagggaaagttatatataatttgtacctgcaaat |
114 |
Q |
| |
|
||||||||||||||| || | ||||||||||||| || ||||| |||||||| ||| |||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
54894223 |
accgtatttgcaaaaaggcgatgatcaaatattttaataataaagtagtctgatttttttttactaaagggtaagttata----atttgtacctgcaaat |
54894318 |
T |
|
| Q |
115 |
ggctggatacattttcccttgtaagtccttcaacattcatcaagtcaagtattttcttaggcgaagcctctgcaataacagatgaagaaactacatatta |
214 |
Q |
| |
|
|||| | |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54894319 |
ggctagctacattttcccttgtaagcccttcaacattcatcaagtcacgtatttttttaggataagcctctgcaataatagatgaagaaactacatatta |
54894418 |
T |
|
| Q |
215 |
ggaacaataatatccatatttaacaatcattcatcaa |
251 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
54894419 |
ggaacaataatatccatatttaagtatcaatcatcaa |
54894455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 54888590 - 54888814
Alignment:
| Q |
5 |
tttaacttcgaccgtatttgcaaaatggaggcgatcaaatattttcatgataaactagtctgagatttctttactaaagggaaagttatatataatttgt |
104 |
Q |
| |
|
|||||||||||| |||||||||||| || || ||| ||||||||| ||||||||||||| ||| ||| || || |||| ||| || |||| ||||| |
|
|
| T |
54888590 |
tttaacttcgacggtatttgcaaaaaggtggtgataaaatattttaatgataaactagtatgaatttttttgacaaaag---aagaaat-tatagtttgt |
54888685 |
T |
|
| Q |
105 |
acctgcaaatggctggatacattttcccttgtaagtccttcaacattcatcaagtcaagtattttcttaggcgaagcctctgcaataacagatgaagaaa |
204 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |||||||| |
|
|
| T |
54888686 |
acctgcaaatggctagctacattttcccttgtaagcccttcaacattcatcaagtcacatatcttcttaggataagcctctgcaataacagttgaagaaa |
54888785 |
T |
|
| Q |
205 |
ctacatattaggaacaataatatccatat |
233 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
54888786 |
gtacatgttaggaacaataatatccatat |
54888814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 771 - 869
Target Start/End: Complemental strand, 2888631 - 2888533
Alignment:
| Q |
771 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
869 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
2888631 |
cttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattactaggtcaaa |
2888533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 869
Target Start/End: Complemental strand, 2904734 - 2904636
Alignment:
| Q |
771 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
869 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
2904734 |
cttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattactaggtcaaa |
2904636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 869
Target Start/End: Complemental strand, 2893226 - 2893128
Alignment:
| Q |
771 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
869 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||| | ||||||| ||||| || || |||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
2893226 |
cttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccgtccatgtctggcatatgaacattgctgattactaggtcaaa |
2893128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 790 - 869
Target Start/End: Original strand, 48870467 - 48870546
Alignment:
| Q |
790 |
tccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
869 |
Q |
| |
|
||||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
48870467 |
tccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaaa |
48870546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 22086071 - 22085982
Alignment:
| Q |
105 |
acctgcaaatggctggatacattttcccttgtaagtccttcaacattcatcaagtcaagtattttcttaggcgaagcctctgcaataaca |
194 |
Q |
| |
|
|||||||||||||| | |||||||| || |||| ||||||| |||||||| |||||||||||||| || |||| ||||||||||| |
|
|
| T |
22086071 |
acctgcaaatggcttgccacattttctctggtaatcccttcaatattcatcagctcaagtattttcttcggaacagcccctgcaataaca |
22085982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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