View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_21 (Length: 491)
Name: NF20179_low_21
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 232 - 479
Target Start/End: Original strand, 1497301 - 1497553
Alignment:
| Q |
232 |
gatagactggagcacaattaacagattcaaccctaactcattccactacaagaaa-----atatgtgatttgctgcgacaacttttgtagctaatttata |
326 |
Q |
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| T |
1497301 |
gatagactggagcacaattaacagattcaaccctaactcattccaccacaagaaattaaaatatgtgatttgctgcgacaacatttgtagctaatttata |
1497400 |
T |
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| Q |
327 |
gcaaaaaagttagctatggatatgctacagaatatctatgaaatggttgtaacatttccgtagcaacataactacagcttaacttagcaattcgttgcaa |
426 |
Q |
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| T |
1497401 |
gcagagaagttagctatggatatgctacagaatatctatgaaatggttgtaacatttccgtagcaacataactacagcttaacttagcaattcgttgcaa |
1497500 |
T |
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| Q |
427 |
atccatggctaaacagaaaaccaaaaattcatagcaaaagcacaactaaactg |
479 |
Q |
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| T |
1497501 |
atccatggctaaacagaaaaccaaaaattcatagcaaaagcacaactaaactg |
1497553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 1497072 - 1497251
Alignment:
| Q |
1 |
ttcatacattcatatatgaatcacatagataattacttcattcaagaatcagtcaaataaaatattatatctaacataattaagggtatgcaatccacca |
100 |
Q |
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| T |
1497072 |
ttcatacattcatatatgaatcacatagataattacttcattcaagaatcagtcagataaaatattatatctaacataa--aagggtatgcaatccacca |
1497169 |
T |
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| Q |
101 |
cctcacaatacccgctgtagataattgtaaaaataggtttttaaaacagaatgatttacttacccaaataaaatcgtagtcc |
182 |
Q |
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| T |
1497170 |
cctcacaatacccgctgtagataattgtaaaaataggtttttaaaacagaatgatttacttacccaaataaaatcgtagtcc |
1497251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 5305287 - 5305334
Alignment:
| Q |
276 |
actacaagaaaatatgtgatttgctgcgacaacttttgtagctaattt |
323 |
Q |
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| T |
5305287 |
actacaagaaaatatgtgatttgctacgacaatatttgtagctaattt |
5305334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 8292390 - 8292335
Alignment:
| Q |
273 |
tccactacaagaaaatatgtgatttgctgcgacaacttttgtagctaatttatagc |
328 |
Q |
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| T |
8292390 |
tccacaacaagaaaatatgtgatttgctacgacaattttcgtagctaatttgtagc |
8292335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 25017238 - 25017185
Alignment:
| Q |
275 |
cactacaagaaaatatgtgatttgctgcgacaacttttgtagctaatttatagc |
328 |
Q |
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| T |
25017238 |
cactacaagaaaatatgtgatttgctgcgatgtcttttgcagctaatttctagc |
25017185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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