View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_22 (Length: 490)
Name: NF20179_low_22
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 45 - 475
Target Start/End: Original strand, 31244498 - 31244920
Alignment:
| Q |
45 |
attccatgctctttcagcttgcttcaacccatagagaagagaaacagttttgctttatataaaagggtgggttaaatgttggggtgacagtataaatgtc |
144 |
Q |
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| T |
31244498 |
attccatgcttttt-agcttgcttcaacccatagaaaagagaaatagttttgctttatataaaagggtgggttaaatgttggggtgacggtataaatgtc |
31244596 |
T |
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| Q |
145 |
agggtgtagggtataattttctgataatgatttatagtccggtagtaagagagggcaggcccgtgtttcctttagaagattgctctatgcatcatgtgga |
244 |
Q |
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| T |
31244597 |
agggtgtagggtataattttctgataatgatttatagtccggtagtaagagagggcaggcccgtgtttcctttagaagattgctctatgcatcatgtgga |
31244696 |
T |
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| Q |
245 |
ttgttgccgcctctgagataagttgatcggaagttacgctctatccaaaaatgtccatcagatcgtatcttccgatatgttttgagtgaccgtgagtggt |
344 |
Q |
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| T |
31244697 |
ttgttgccgcctctgagataagttgatcggaagtcacgctctatccaaaaatgtccatcaggtcgtatcttccgatatgttttgagtgaccgtgagtggc |
31244796 |
T |
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| Q |
345 |
gattcaatatatnnnnnnnnnnnnncttatatcattttcctacaactttatcaattctatacatcttttcattttttaaaatctgttcacccctctactt |
444 |
Q |
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| T |
31244797 |
gattcaatatat-ataaaaaaaaaacttctatcattttcctacaa------caattctacacatcttttcatcttttaaaatctgttcacccctctactt |
31244889 |
T |
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| Q |
445 |
ataacactggaggttcaacccattgcagcat |
475 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
31244890 |
ataacattggaggttcaacccattgcagcat |
31244920 |
T |
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