View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_low_23 (Length: 480)

Name: NF20179_low_23
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_low_23
NF20179_low_23
[»] chr1 (6 HSPs)
chr1 (228-459)||(2312183-2312419)
chr1 (307-377)||(2927117-2927189)
chr1 (18-165)||(12318374-12318519)
chr1 (14-118)||(2926678-2926780)
chr1 (74-159)||(9109275-9109360)
chr1 (194-245)||(3315688-3315737)
[»] chr6 (3 HSPs)
chr6 (70-165)||(5739845-5739940)
chr6 (70-125)||(11660825-11660880)
chr6 (102-165)||(17763245-17763312)
[»] chr5 (5 HSPs)
chr5 (14-165)||(316932-317083)
chr5 (74-179)||(10700486-10700591)
chr5 (81-165)||(10054666-10054750)
chr5 (68-148)||(8038418-8038498)
chr5 (69-165)||(8445916-8446008)
[»] chr4 (3 HSPs)
chr4 (74-165)||(41961624-41961715)
chr4 (74-159)||(6719781-6719866)
chr4 (90-126)||(28684697-28684733)
[»] chr8 (2 HSPs)
chr8 (14-165)||(11137194-11137343)
chr8 (68-150)||(7624813-7624894)
[»] chr3 (3 HSPs)
chr3 (68-164)||(5270592-5270689)
chr3 (27-165)||(20937838-20937974)
chr3 (3-57)||(26323027-26323081)
[»] chr2 (1 HSPs)
chr2 (68-117)||(16676449-16676498)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 8e-90; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 228 - 459
Target Start/End: Complemental strand, 2312419 - 2312183
Alignment:
Q  228 tatattcttgtggcatgagtataatgcttaattcaattgaaacaacttgagttatcat---ttaattaaaaccaggatggagcagtatgcagatcaacat 324  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  2312419 tatattcttgtggcatgagtataatgtttaattcaattgaaacaacttgagttatcatcatttaattaaaaccaggatggagcagtatgcagatcaacat 2312320  T
Q  325 tttcatctagtggtctaaaataat--cggaaacattctagtaaagaaaacttcaaagcactacaaaaatacaaccttaatcattgatcttagaattcata 422  Q
    ||||||||||| ||||||| ||||  | ||||||| ||||||||||||||||||||  ||| |||||||| |||||||||||||||||||||||||||||    
T  2312319 tttcatctagtagtctaaagtaatgacagaaacatgctagtaaagaaaacttcaaaatactgcaaaaatataaccttaatcattgatcttagaattcata 2312220  T
Q  423 gattatgcaacagccagaactacaaagtcattataat 459  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  2312219 gattatgtaacagccagaactacagagtcattataat 2312183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 2927117 - 2927189
Alignment:
Q  307 cagtatgcagatcaacattttcatctagtggtctaaaataat--cggaaacattctagtaaagaaaacttcaa 377  Q
    ||||||||||||||||||||||||||||| |||||||| |||  | ||||||| |||||||||||||||||||    
T  2927117 cagtatgcagatcaacattttcatctagtagtctaaaagaatgacagaaacatgctagtaaagaaaacttcaa 2927189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 12318519 - 12318374
Alignment:
Q  18 tttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggttttgttttacacctggttgttagattagatctagat 117  Q
    |||| ||||||||| |||||| ||||| |||| |||||||||        ||||||||| || ||||| ||||||  |||||| ||| ||| ||||||||    
T  12318519 tttggtgttgttctcttttctttactccctttatcttgtttattcttt--ggttcaattatgattttgctttacaattggttgctaggttaaatctagat 12318422  T
Q  118 ccgttgttattgtttatgattattttggttattagttgtcattgatac 165  Q
    | |||||| |||  | || |||||||||||||| |||| |||||||||    
T  12318421 ctgttgttgttgcgtgtgcttattttggttattggttgccattgatac 12318374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 2926678 - 2926780
Alignment:
Q  14 attctttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggttttgttttacacctggttgttagattagatct 113  Q
    |||||||| ||||||||| ||| ||||||||||||| |||||||||        | || |||| ||||||| |||||||| || |||||||||||||| |    
T  2926678 attctttggtgttgttctttttactctactctctttatcttgttta--ttctttgatttaattatggttttattttacacttgattgttagattagatat 2926775  T
Q  114 agatc 118  Q
    |||||    
T  2926776 agatc 2926780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 9109360 - 9109275
Alignment:
Q  74 attgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcat 159  Q
    ||||||||| || || |||  |||||| ||| ||||||||||||| |||||||||  || || ||||||| |||||| ||||||||    
T  9109360 attgtggttatgcttcacagttggttgctagcttagatctagatctgttgttattacttgtggttattttagttattggttgtcat 9109275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 3315688 - 3315737
Alignment:
Q  194 taggcactaactcatccacattgcttggctgctatatattcttgtggcatga 245  Q
    ||||||||||||||||||  ||||||| ||||| |||||||||||| |||||    
T  3315688 taggcactaactcatcca--ttgcttgtctgctgtatattcttgtgacatga 3315737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 5739940 - 5739845
Alignment:
Q  70 ttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgatac 165  Q
    |||| ||||||||||| ||||||| |||||| |||||||||| |||||  |||||| ||| |||||||||||||||||||||||| ||||||||||    
T  5739940 ttcagttgtggttttgctttacacttggttgctagattagatttagatatgttgttgttgattatgattattttggttattagttatcattgatac 5739845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 11660825 - 11660880
Alignment:
Q  70 ttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgtt 125  Q
    ||||| |||||||||| ||||||| |||||| ||||||||||||||||| ||||||    
T  11660825 ttcaaatgtggttttgctttacacttggttgctagattagatctagatctgttgtt 11660880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 17763245 - 17763312
Alignment:
Q  102 tagattagatctagatccgttgttattgtttatgattattt-----tggttattagttgtcattgatac 165  Q
    ||||||||||||||||  ||||||||||||| |||||||||     |||||||| ||||||||||||||    
T  17763245 tagattagatctagatt-gttgttattgtttgtgattatttacatttggttattggttgtcattgatac 17763312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 316932 - 317083
Alignment:
Q  14 attctttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggttttgttttacacctggttgttagattagatct 113  Q
    ||||||||| |||||||| ||||| ||||||||||| | |||||||        |||||||||||||||||| ||||||| |||||| ||||| ||||||    
T  316932 attctttgt-gttgttctcttttccctactctctttattttgtttattcttt--ggttcaattgtggttttgctttacacttggttgctagataagatct 317028  T
Q  114 agatc---cgttgttattgtttatgattattttggttattagttgtcattgatac 165  Q
    |||||   ||||||| ||| || || |||||||||||||| ||||||| ||||||    
T  317029 agatctgtcgttgttgttgcttgtggttattttggttattggttgtcactgatac 317083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 10700591 - 10700486
Alignment:
Q  74 attgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgataccaacccca 173  Q
    |||||||||||| ||||||| || ||||||||||| || ||||||| ||||||||| ||    |||||||||||||| |||||||||||||||  || ||    
T  10700591 attgtggttttgatttacacttgattgttagattaaatatagatccattgttattgcttgcagttattttggttattggttgtcattgatacccgcctca 10700492  T
Q  174 cacatc 179  Q
    ||||||    
T  10700491 cacatc 10700486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 10054750 - 10054666
Alignment:
Q  81 ttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgatac 165  Q
    ||||| ||||||| |||||| ||||||||||||||||  |||| | |||  | || |||||||| ||||||||||||||||||||    
T  10054750 ttttgctttacacttggttgctagattagatctagatttgttgatgttgcatgtggttattttgattattagttgtcattgatac 10054666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 8038418 - 8038498
Alignment:
Q  68 ggttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggtta 148  Q
    ||||| |||||||||||  ||||||| |||||| ||||||||||| |||||  ||||| ||| || ||||| |||||||||    
T  8038418 ggttcgattgtggtttttctttacacttggttgctagattagatcaagatctattgttgttgattgtgattgttttggtta 8038498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 8445916 - 8446008
Alignment:
Q  69 gttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgatac 165  Q
    |||| |||| ||||||||||||||| ||||||    |||||||||||||| |||||| ||| || || |||| ||| |||| ||||| |||||||||    
T  8445916 gttcgattgcggttttgttttacacttggttg----attagatctagatctgttgttgttgcttgtggttatcttgattatcagttgccattgatac 8446008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 41961624 - 41961715
Alignment:
Q  74 attgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgatac 165  Q
    |||||||||||| |||| ||||||||  |||||||||||||||||  ||||| ||| || |  || ||||||||||| ||||||||||||||    
T  41961624 attgtggttttgctttaaacctggttactagattagatctagatctattgttgttgcttgtagtttttttggttattggttgtcattgatac 41961715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 6719781 - 6719866
Alignment:
Q  74 attgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcat 159  Q
    |||||||||||| ||| ||| |||||  ||||||||||||||||| |||||| |||  | ||| | ||||||||||| ||||||||    
T  6719781 attgtggttttgctttgcacttggtttctagattagatctagatctgttgtttttgcctgtgactgttttggttattggttgtcat 6719866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 28684733 - 28684697
Alignment:
Q  90 acacctggttgttagattagatctagatccgttgtta 126  Q
    |||| |||||||||||||||||||| |||||||||||    
T  28684733 acacttggttgttagattagatctaaatccgttgtta 28684697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 11137194 - 11137343
Alignment:
Q  14 attctttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggttttgttttacacctggttgttagattagatct 113  Q
    |||||||| ||||||| | ||||||||||||||||| |||||||||        ||||| |||||||||||  |||| || || ||| |||||||||| |    
T  11137194 attctttgatgttgttttgttttctctactctctttatcttgttta--ttcattggttcgattgtggtttttctttatacttgattgctagattagattt 11137291  T
Q  114 agatccgttgttattgtttatgattattttggttattagttgtcattgatac 165  Q
    ||||  ||| || ||| || || |||||||| ||||  ||||||||||||||    
T  11137292 agatatgttattgttgcttgtggttattttgattatcggttgtcattgatac 11137343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 7624894 - 7624813
Alignment:
Q  68 ggttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttatt 150  Q
    ||||| |||||||||||  ||||||| |||||| ||| |||||||||||| ||||||| ||||||  |  |||||||||||||    
T  7624894 ggttcgattgtggttttactttacacatggttgctag-ttagatctagattcgttgttgttgtttgcggctattttggttatt 7624813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 5270592 - 5270689
Alignment:
Q  68 ggttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttat-gattattttggttattagttgtcattgata 164  Q
    ||||| ||||||||||||  |||||| |||||| |||||||||||||||||  ||||| ||| || | | || |||| |||||| |||||||||||||    
T  5270592 ggttcgattgtggttttgcattacacttggttgctagattagatctagatctattgttgttgcttgtggtttttttttgttattggttgtcattgata 5270689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 20937838 - 20937974
Alignment:
Q  27 gttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgtta 126  Q
    ||||| ||||||||||||||||| |||||||||        ||||| |||||| ||||  ||||||| || ||  ||||||||||||||||  ||||||     
T  20937838 gttctcttttctctactctctttatcttgtttattattt--ggttcgattgtgattttactttacacttgattaatagattagatctagatttgttgttg 20937935  T
Q  127 ttgtttatgattattttggttattagttgtcattgatac 165  Q
     || || |  |||||||| ||||||||||||||||||||    
T  20937936 ctgcttgtagttattttgcttattagttgtcattgatac 20937974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 26323081 - 26323027
Alignment:
Q  3 gtgggtaaattattctttgttgttgttctattttctctactctctttttcttgtt 57  Q
    |||||||||  |||||||| |||| |||| ||||||||||||||||| |||||||    
T  26323081 gtgggtaaacaattctttggtgttattctcttttctctactctctttatcttgtt 26323027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 16676449 - 16676498
Alignment:
Q  68 ggttcaattgtggttttgttttacacctggttgttagattagatctagat 117  Q
    ||||| |||||||||||| ||||||| | |||| ||||||||||||||||    
T  16676449 ggttcgattgtggttttgatttacactttgttgctagattagatctagat 16676498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University