View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_25 (Length: 469)
Name: NF20179_low_25
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 26 - 453
Target Start/End: Complemental strand, 54317805 - 54317380
Alignment:
| Q |
26 |
tgatgaatttgtgaataaattcacaacatcatattaataacttaaaaatacagagcact--atattcatgtttatggaagttgaatatatttgtaagtgt |
123 |
Q |
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| T |
54317805 |
tgatgaatttgtgaataaattcacaacatcatattaataacttaaaaagacagagcactctatattcatgtttatggaagttgaatatatctgtaagtgt |
54317706 |
T |
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| Q |
124 |
gttagatattggaaaaaataagcgtaaaataaaatacaatcacaa-cacaagagcataatttggaaactataaagtctgaagaaataatcacagtcattg |
222 |
Q |
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| T |
54317705 |
gttagatattggaaaaaataagcataaagtaaaaga--at-acaatcacaagaacataatttggaaactataaagtctggagaaataatcacagtcattg |
54317609 |
T |
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| Q |
223 |
tgtaatgatggacaactaattactaaaaaataacactatatgaaaattgtaataacatataagcgattct-aaatttcaacccatggccttcccaagaca |
321 |
Q |
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| T |
54317608 |
tataatgatcgacaaccaattactaaaaaatatcactatatgaaaattgtaacaacatataagcgattctaaaaattcaacccatggccttcccaagaca |
54317509 |
T |
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| Q |
322 |
cccacattcttcnnnnnnntactatataactacatcttaacaccactctaacccaaaacacagagtatatgaaaaagagaaaaagtcatatataaaccta |
421 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54317508 |
cccacattcttcaaaaa---aatatataactacatcttaacaccactctaacccaaaacacaaagtatatgaaaaagagaaaaagtcatatataaaccta |
54317412 |
T |
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| Q |
422 |
aagtgtttcttgtccttgtttcacgtcgttat |
453 |
Q |
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| T |
54317411 |
aagtgtttcttgtccttgtttcacgtcgttat |
54317380 |
T |
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