View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_27 (Length: 469)
Name: NF20179_low_27
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 2 - 463
Target Start/End: Complemental strand, 34586174 - 34585704
Alignment:
| Q |
2 |
atcagcaagtatgagtaaacacaataaaactga--atagaagataattacaaaacaatttattgaagaaatga----ttcaaggggatcttgacaacata |
95 |
Q |
| |
|
||||||||||||||||||||||| | | |||| ||| ||||||||| ||||||||| ||||||||||| || || |||| ||| |||||||| |
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| T |
34586174 |
atcagcaagtatgagtaaacacacttcacctgatcataaaagataatttcaaaacaatctattgaagaaaagaaagatttcagggactcta-acaacata |
34586076 |
T |
|
| Q |
96 |
tacaaaagcaagagtaaaaattatataactaaaatataacagactttgaatccctctttttctaagacat----gttttcttgaacaatccacttatctg |
191 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34586075 |
tacaaaagcaagagtaaaaattatataactaaaatataacagactttgaatccctctttttctaagacatacatgttttcttgaacaatccacttatctg |
34585976 |
T |
|
| Q |
192 |
atgagagtaccaaacattcgaaatgaacttaaggtaattaaacagttgagagggagagaaacttctgaagacaactcgttgtaggatgcattttgttgtc |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34585975 |
atgagagtaccaaacattcgaaatgaacttaaggtaattaaacagttgagagggagagaaacttctgaagacaactcgttgtaggatgcattttgttgtc |
34585876 |
T |
|
| Q |
292 |
tcaatgagactaacaaccttccttctatgcacgctcaaacagttcgcttcaagcatagttctaacgactggttccacataaaagataggacttgcttaaa |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34585875 |
tcaatgagactaacaaccttccttctatgcatgctcaaacagttcgcttcaagcatagttctaacgactggttccacataaaagataggacttgcttaaa |
34585776 |
T |
|
| Q |
392 |
ttgagttgctcctgtggttgaagttgatgtcatcttgattcaagctggctcttgatactatgtgttgagagt |
463 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34585775 |
ttgagttgctcctgtggttgaagttgatgtcatcttgattcaagctggctcttgatactatgtgttgagagt |
34585704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 34584737 - 34584402
Alignment:
| Q |
1 |
catcagcaagtatgagtaaacacaataaaactgaatagaagataattacaaaacaatttattgaagaaatgattcaaggggatcttgacaacatatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
34584737 |
catcagcaagtatgagtaaacactcttcaactgaataaaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacatatacaa |
34584638 |
T |
|
| Q |
101 |
aagcaagagtaaaaat-----------tatataactaaaatataacagactttgaatccctctttttctaagacatgttttcttgaacaatccacttatc |
189 |
Q |
| |
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|||||||||||||||| |||||| |||||| ||||||||| |||| |||||| ||| | |||||||||||||| |||||||||| |
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| T |
34584637 |
aagcaagagtaaaaatgaatggacatttatatatctaaaaaataacagacattga------cttttt--aagtcctgttttcttgaacagtccacttatc |
34584546 |
T |
|
| Q |
190 |
tgatgagagtaccaaacattcgaaatgaacttaaggtaattaaacagttgagagggagagaaacttctgaagacaactcgttgtaggatgcattttgttg |
289 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| |
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| T |
34584545 |
cgatgagagtaacaaacatctgaaatgtacttaaggtaactgaacagttgagagggagagaaacttctgaagccaactccttgtaggatccattttgttg |
34584446 |
T |
|
| Q |
290 |
tctcaatgagactaacaaccttccttctatgcacgctcaaacagtt |
335 |
Q |
| |
|
|||||| ||||||||||||||||||||| | |||||||||||| |
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|
| T |
34584445 |
cctcaat--gactaacaaccttccttctatttaagctcaaacagtt |
34584402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 393 - 459
Target Start/End: Complemental strand, 34582087 - 34582021
Alignment:
| Q |
393 |
tgagttgctcctgtggttgaagttgatgtcatcttgattcaagctggctcttgatactatgtgttga |
459 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| |||||||| |||||| ||||||||||||||||| |
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|
| T |
34582087 |
tgagttgctcctgtgattgaacttgatgtcattgtgattcaacctggctgttgatactatgtgttga |
34582021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 34582844 - 34582763
Alignment:
| Q |
253 |
cttctgaagacaactcgttgtaggatgcattttgttgtctcaatgagactaacaaccttccttctatgcacgctcaaacagttc |
336 |
Q |
| |
|
||||||||| |||||| || ||||| |||||||||| |||| ||| ||||||||||||||||| ||| |||||||||||| |
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|
| T |
34582844 |
cttctgaagccaactccctgaaggatccattttgttgcctcagtga--ctaacaaccttccttcttcgcaaactcaaacagttc |
34582763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 19179850 - 19179735
Alignment:
| Q |
1 |
catcagcaagtatgagtaaacacaataaaactga--atagaagataattacaaaacaatttattgaagaaatgattcaaggggatcttgacaacatatac |
98 |
Q |
| |
|
|||||||||||||||||||||||| | || ||| ||| |||| |||| ||||||||| |||| |||||| |||||||||| ||| |||||||||||| |
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|
| T |
19179850 |
catcagcaagtatgagtaaacacactcaa-ctgctcataaaagacaatttcaaaacaatctatttaagaaaagattcaagggactct-gacaacatatac |
19179753 |
T |
|
| Q |
99 |
aaaagcaagagtaaaaat |
116 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19179752 |
aaaagcaagagtaaaaat |
19179735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1478230 - 1478115
Alignment:
| Q |
1 |
catcagcaagtatgagtaaacacaataaaactga--atagaagataattacaaaacaatttattgaagaaatgattcaaggggatcttgacaacatatac |
98 |
Q |
| |
|
|||||||||||||||||||||||| | || ||| ||| |||| |||| ||||||||| |||| |||||| |||||||||| ||| |||||||||||| |
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|
| T |
1478230 |
catcagcaagtatgagtaaacacactcaa-ctgctcataaaagacaatttcaaaacaatctatttaagaaaagattcaagggactct-gacaacatatac |
1478133 |
T |
|
| Q |
99 |
aaaagcaagagtaaaaat |
116 |
Q |
| |
|
|||||||||||| ||||| |
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|
| T |
1478132 |
aaaagcaagagttaaaat |
1478115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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