View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_28 (Length: 460)
Name: NF20179_low_28
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 11 - 446
Target Start/End: Complemental strand, 43909164 - 43908729
Alignment:
| Q |
11 |
catagggcattatgttcttctgagagatgctagacgatccgacaagtcctcataatctggtagactaggatgcacatgccctgtggttgttgtcctcatc |
110 |
Q |
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| T |
43909164 |
catagggcattatgttcttctgagagatgctagacgatccgacaagtcctcataatctggtagactaggatgcacatgccctgtggttgttgtcctcatc |
43909065 |
T |
|
| Q |
111 |
atttcaggtactaaggaagtagctctatcatttgcttgtaatgtatccatcctacttgattctctttgaggaagagattttcttctccaagttttagcaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43909064 |
atttcaggtactaaggaagtagctctatcatttgcttgtaatgtatccatcctacttgattctctttgaggaagagattttcttctccaagttttagcaa |
43908965 |
T |
|
| Q |
211 |
caggtgaacttgatttttcataccttctattttgatcctttacatgttcttttcccatgccaggttcattaggagtttgtttcttaacgtatcgcattaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43908964 |
caggtgaacttgatttttcataccttctattttgatcctttacatgttcttttcccatgccaggttcattaggagtttgtttgttaacgtatcgcattaa |
43908865 |
T |
|
| Q |
311 |
aagtccatctaatatcatttcttcatccaatgcaccacctgtttcagaaaaatctttaactgtgttttcaacaggtggtggttttagaggtctccttctc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908864 |
aagtccatctaatatcatttcttcatccaatgcaccacctgtttcagaaaaatctttaactgtgttttcaacaggtggtggttttagaggtctccttctc |
43908765 |
T |
|
| Q |
411 |
actgatcttggtttcggcttttcagcaggtagagct |
446 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
43908764 |
actgatcttggtttcggcttttcagcaggtagagct |
43908729 |
T |
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