View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_29 (Length: 455)
Name: NF20179_low_29
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Original strand, 37677744 - 37678175
Alignment:
| Q |
7 |
tagattatacttcatgagttctatgtcccacattggttggatgaaacaacaagtactggggctgggatgagattatttggactgcatgaaaaatttgaac |
106 |
Q |
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| T |
37677744 |
tagattatacttcatgagttctatgtcccacattggttggatgaaacaacaagtactggggctgggatgagattatttggactgcatgaaaaatttgaac |
37677843 |
T |
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| Q |
107 |
ttcggactcttgtattatagtgttacttctaaaaagctggacttggctctttgcttttgaataactgtagacctggttagaaattgtaaacctactttca |
206 |
Q |
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| T |
37677844 |
ttgggactcttgtattatagtgttacttctaaaaagctggacttggctctttgcttttgaataactgtagacctggttagaaattgtaaacctactttca |
37677943 |
T |
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| Q |
207 |
cactcaaatgaaccatctattttaatggatgtcttcaagaatttatcctagaccaacaatttgaatcccatcattttaatacgtttcttaaatatattaa |
306 |
Q |
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| T |
37677944 |
cactcaaatgaaccatctattttaatggatgtcttcaagaatttatcctagaccaacaatttgaatcccatcattttaatacgtttcttaaatatattaa |
37678043 |
T |
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| Q |
307 |
atatttatttcactctccaagaaatatatcaagtgaatctacatgagaaagaagtctcgatttgttgtttgatatatagtagtctgcttaagcataagaa |
406 |
Q |
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| T |
37678044 |
atatttatttcactctccaagaaatatatcaagtgaatctacatgagaaagaagtctcgatttgttgtttg--atatagtagtctgcttaagcataagaa |
37678141 |
T |
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| Q |
407 |
atttcagattacaaatattcattttgttctttat |
440 |
Q |
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| T |
37678142 |
atttcagattacaaatattcattttgttctttat |
37678175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 37679669 - 37679715
Alignment:
| Q |
18 |
tcatgagttctatgtcccacattggttggatgaaacaacaagtactg |
64 |
Q |
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| T |
37679669 |
tcatgagttttatgtcccacattggttagaagaaataacaagtactg |
37679715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 37681969 - 37682013
Alignment:
| Q |
18 |
tcatgagttctatgtcccacattggttggatgaaacaacaagtac |
62 |
Q |
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| T |
37681969 |
tcatgagttctatgtgccacattgcttagttgaaacaacaagtac |
37682013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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