View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_31 (Length: 436)
Name: NF20179_low_31
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Complemental strand, 41648246 - 41647843
Alignment:
| Q |
14 |
aaattcaaaaacccacaacccatctttccacaacaacatatcccgcacacttgcattttgattatttgtgatagcaaaaagtcttgggagtttatccctc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
41648246 |
aaattcaaaaacccacaacccatctttccacaacaacatatcccgcacacttgcattttgattatttgtgatagcaaaaagtctagggaatttatccctc |
41648147 |
T |
|
| Q |
114 |
aacacttcgttgccccttcggcaatattctttgcaccatatagttaaaacttaaagcagagacccggcaaccagcaccacctatccccaagtcaaatcca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41648146 |
aacacttcgttgccccttcggcaatattctttgcaccaaatagttaaaacttaaagcagagacccggcaaccagcaccacctatccccaagtcaaatcca |
41648047 |
T |
|
| Q |
214 |
aactttgcagcaaacagtttggtgtcgatctagcaaccaaccaatctgtaaaatcttcgactgtaaacaattaatccgaacaaaacacctctttcgtggc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41648046 |
aactttgcagcaaacagtttggtgtcgatctagcaaccaaccaatctgtaaaatcttcgactgtaaacaattaatccgaacaaaacacctctttcgtggc |
41647947 |
T |
|
| Q |
314 |
aattaccttgaggttttaaataaacactatgcaaccaactctctccatttgccactcaataaatatgacagaatacaaattaatcacatgctgcagttga |
413 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41647946 |
cattaccttgaggttttaaataaacactatacaaccaactcactccatttgccactcaataaatatgacagaatacaaattagtcacatgctgcagttga |
41647847 |
T |
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| Q |
414 |
tcaa |
417 |
Q |
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|||| |
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| T |
41647846 |
tcaa |
41647843 |
T |
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