View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_low_32 (Length: 420)
Name: NF20179_low_32
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 8766798 - 8766429
Alignment:
| Q |
18 |
attttactagttccaatttccaagactatactctatagcacagaattataaagattaagtatgaaactcttcttctcattcttgttcaatgctaaaaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8766798 |
attttactagttccaatttccaagactatactctatagcacagaattataaagattaagtatgaaactcttcttctcattcttgttcaatgctaaaaaca |
8766699 |
T |
|
| Q |
118 |
acaaatatcaaatttgtttaaccatggccacaaaacagtacaatgtgagttcttttcttagccggaatactatgaaaaggaaataaatgagggagaactg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8766698 |
acaaatatcaaatttgtttaaccatggccacaaaacagtacaatgtgagttcttttcttagccggaatactatgaaaaggaaataaacgagggagaactg |
8766599 |
T |
|
| Q |
218 |
agctaaagaaattatgcaagatatcttacagggtatcaagatgggaatgattagcaaaaacttctccgattggcaaggagagtgcattattgctcacatt |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8766598 |
agctaaagaaactatgcaagatatcttacagggtatcaagatgggaatgattagcaaaaacttctccgattggcaaggagagtgcattattgctcacatt |
8766499 |
T |
|
| Q |
318 |
cctgaaaaccacatataaatagtgtaagagcggctccgatgtatgaccaaatttaacattatgaaacaaa |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8766498 |
cctgaaaaccacatataaatagtgtaagagcggctccgatgtatgaccaaacttaacattatgaaacaaa |
8766429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University