View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_low_33 (Length: 420)
Name: NF20179_low_33
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 210 - 415
Target Start/End: Complemental strand, 6163865 - 6163668
Alignment:
| Q |
210 |
tttcaagttttaataaaaatgagagagctaaagttgtgaatggagaaaaactttgaatcaaatgttttaagttttaaataatacaaccacaatatttgaa |
309 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
6163865 |
tttcaaatttcaataaaaatgagagagctaaagttgtgaatggagaaaaactttgaat-----gttttaagttttaaataatataaccacgatatttgaa |
6163771 |
T |
|
| Q |
310 |
catcatannnnnnnnaggttcattcaaggctccttttaatctttatctctatattcctatcacatgaccaaacctattacattatcacatcaatctattt |
409 |
Q |
| |
|
|| ||| |||||||||||| || ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6163770 |
tattatattttttt-aggttcattcaacgccccttttaatttttatct--atattcctatcacatgatcaaacctattacattatcacatcaatctattt |
6163674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 6164093 - 6163984
Alignment:
| Q |
93 |
tttttgtattaggtgttgcaggggattggtgtttcctcaagtgtcgacttaattaagatgtcatatattcacgtatatgcttttgcaccttactagtctt |
192 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6164093 |
tttttgtattaggtgttgcagtggattggtgtttcctcaagtgtcgacttaattaagatgtcatatattcacgtatatgcttttgcaccttactagtctt |
6163994 |
T |
|
| Q |
193 |
tctataaaac |
202 |
Q |
| |
|
|||||||||| |
|
|
| T |
6163993 |
tctataaaac |
6163984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 6164371 - 6164280
Alignment:
| Q |
6 |
caattctatagatttgtttaattgtttt-catggattttggtctagtctctcaagttgttgttatctttactttttaattatcaataatttttgtat |
101 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6164371 |
caattctatagatttgattaattgtttttcttggattttggtctagtctctca-----ttgttatctttactttttaattatcaataaactttgtat |
6164280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University