View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_36 (Length: 411)
Name: NF20179_low_36
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 49456284 - 49456690
Alignment:
| Q |
1 |
atcttaaaaaaggtaaaattctgaatagatggtgaatcctatccctgtaaataacatcggtaatcaatcattcatttccctgtagcttccatgataacaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49456284 |
atcttaaaaaaggtaaaattctgaatagatcgtgaaccctatccctgtaaataacatcggtaatc----attcatttccctgtagcttccatgataacaa |
49456379 |
T |
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| Q |
101 |
ggaacccggatttcttgttgtcactgactacccgaaatcgtaagtcaagagatccgtgatcgtctgatcgagatcgaaagtccagatctaaagcagattt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49456380 |
ggaacccggatttcttgttgtcactgactacacgaaatcgtaggtcaagagatccatgatcgtctgatcgagatcgaaagtccagatctaaagcagattt |
49456479 |
T |
|
| Q |
201 |
tgatttccttcaaaaactaaaactaccaagcttaagatcgggaccatccgatctcaatcagatcagacatcaggcggtcacggatcccctgactgcgtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49456480 |
tgatttccttcaaaaactaaaactaccaagcttaagatcgggaccatccgatctcaatcagatcagacatcaggcggtcacggatcccctgactgcatga |
49456579 |
T |
|
| Q |
301 |
ttgcatgcagtcaggcagtccagttcaacaagcagacgttcagagattaaacaagtcttgagtttataaactagctaatatcatcaacacagagctcatt |
400 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49456580 |
ttgcatgcagtcaggcagtccagttcgacaaccagacgttcagagattaaacaagtcttgagtttatacactagctaatatcatcaacacagagctcatt |
49456679 |
T |
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| Q |
401 |
gccgtcactag |
411 |
Q |
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|||||| |||| |
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| T |
49456680 |
gccgtcgctag |
49456690 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 31465183 - 31465240
Alignment:
| Q |
197 |
attttgatttccttcaaaaactaaaactaccaagcttaagatcgggaccatccgatct |
254 |
Q |
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||||| |||| ||||||||||||||| ||||||| |||||||| ||||| || ||||| |
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| T |
31465183 |
attttaattttcttcaaaaactaaaattaccaagtttaagatctggaccgtctgatct |
31465240 |
T |
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