View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_4 (Length: 724)
Name: NF20179_low_4
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 11 - 708
Target Start/End: Original strand, 49697207 - 49697904
Alignment:
| Q |
11 |
gagagatgaacattccaatggggatttggaagtgggtgaaagggaaaagaggaacattttgtttgatgggaatgggaaaactgtggaggatcaatttttg |
110 |
Q |
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| T |
49697207 |
gagaaatgaacattccaatggggatttggaagtgggtgaaagggaaaagaggaacattttgtttgatgggaatgggaaaactgtggaggatcaagttttg |
49697306 |
T |
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| Q |
111 |
gaaaagagaattgaggaaattaagttaatggcgagggaagctcgaagaattgagttattggagaagcaaggaaaaggggaagaggaagagaatggggatc |
210 |
Q |
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| T |
49697307 |
gaaaagagaattgaggaaattaagttaatggcgagggaagctcgaagaattgagttattggagaagcaaggaaaaggggaagaggaagagaatggggatc |
49697406 |
T |
|
| Q |
211 |
ctgaaatcgatggtattgagaaagagattggtgagcgtttgttgaagctgaagaataggattaagagtaacaaggatagttcagcagcattgcgattaaa |
310 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49697407 |
ctgaaatcgatggtattgagaaagagattggcgagcgtttgttgaagctgaagaataggattaagagtaacaaggatagttcagcagcattgcgattaaa |
49697506 |
T |
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| Q |
311 |
tggtcgtggaaattctgatgaggatggtgatatgagtgtgaatcaggggatagaggaattagtgtttaagaaaaagtctaaatttaaaagcccttcaact |
410 |
Q |
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| T |
49697507 |
tggtcgtggaaattctgatgaggatggtgatatgagtgtgaatcaggggatagaggaattagtgtttaagaaaaagtctaaatttaaaagcccttcgact |
49697606 |
T |
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| Q |
411 |
aaggctacaagaacaccgaagggatttccagggactcaagatcgtagggtttcaagtgtaaaaccccaagattatggaagtcaggttactgatcgtgcag |
510 |
Q |
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| T |
49697607 |
aaggctacaagaacaccgaagggatttccagggactcaagatcgtagggtttcaagtgtaaaaccccaagattatggaagtcaggttactgatcgtgcag |
49697706 |
T |
|
| Q |
511 |
gaatattggatggcgataagcaagtgaatcaacaagatgtgacagacaaaaatgcttttggtgttccattggaagaaagaggtaaaacagttgatgacaa |
610 |
Q |
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| T |
49697707 |
gaatattggatggcgataagcaagtgaatcaacaagatgtgacagacaaaaatgcttctggtgttccattggaagaaagaggtaaaacagttgatgacaa |
49697806 |
T |
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| Q |
611 |
gtctggggaaattcaaaatgaagggaagaatttggaagaaatgattgaagcacctaatacgaaaacaaaggatggagttacgcccaagagcataaaca |
708 |
Q |
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| T |
49697807 |
gtctggggaaattcaaaatgaagggaagaatttggaagaaatgattgaagcacctaatacgaaaacaaaggatggagttacacccaagagcataaaca |
49697904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 35942596 - 35942492
Alignment:
| Q |
163 |
agttattggagaagcaaggaaaaggggaagaggaagagaatggggatcctgaaatcgatggtattgagaaagagattggtgagcgtttgttgaagctgaa |
262 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
35942596 |
agttattggagaagcaaagaaaaggggaagaggaagagaatggggatcatgaaattgatggtattgaaaaagagattggtgaacgtttgttgaagctgaa |
35942497 |
T |
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| Q |
263 |
gaata |
267 |
Q |
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||||| |
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| T |
35942496 |
gaata |
35942492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 42245144 - 42245108
Alignment:
| Q |
128 |
aattaagttaatggcgagggaagctcgaagaattgag |
164 |
Q |
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| T |
42245144 |
aattaagttaatggtgagggaagctcgaagaattgag |
42245108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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