View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_40 (Length: 384)
Name: NF20179_low_40
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 5 - 368
Target Start/End: Original strand, 54889958 - 54890321
Alignment:
| Q |
5 |
gagcagcacagaataatagaaaatgagaaaacagtatttaggaaagttgaattcaacaacacttcaaaaaatcatattcattcataatttgtaccaaaca |
104 |
Q |
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| T |
54889958 |
gagcagcatagaataatagaaaatgagaaaacagtatttaggaaagttgaattcaacaacacttcaaaaaatcatattcattcataatttgtaccaaaca |
54890057 |
T |
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| Q |
105 |
gactagcaatgtcttttccaatcaaaacaacttaattatttgcaagaaactcatcctctatttttatttccgacttttgtcttaccatttttattgctag |
204 |
Q |
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| T |
54890058 |
gactagcaatgtcttttccaatcaaaacaactgaattatttgcaagaaactcatcctctatttttatttccgacttttgtcttaccatttttattgctag |
54890157 |
T |
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| Q |
205 |
taaagttctctatgtatttgttacaaagaccggaagtgtcaaaacacgagaaatacaatttccaatcaaataataattttttatcttttatgtttctact |
304 |
Q |
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| T |
54890158 |
caaagttctctatgtatttgttacaaagaccggaagtgtcaaaacacgagaaatacaatttccaatcaaataataattttttatcttttatgtttctact |
54890257 |
T |
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| Q |
305 |
aaatttttggcaaatatacttgtttgggtagttcaacatatattattagggtggctaaacataa |
368 |
Q |
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| T |
54890258 |
aaatttttggcaaatatacttgtttgggtagttcaacatatattattagggtggctaaacataa |
54890321 |
T |
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