View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_41 (Length: 384)
Name: NF20179_low_41
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_41 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 68 - 378
Target Start/End: Complemental strand, 16749073 - 16748763
Alignment:
| Q |
68 |
tgatgggtttacagagtatgtgaatgaaggaatgaaataagaaacaagagaatataatggaattattcagaatagtgatgataagctccaatagtacagg |
167 |
Q |
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| T |
16749073 |
tgatgggtttacaaagtatgtgaatgaaggaatgaaataagaaacaagagaatataatggaattattcagaatagtgataataagatccaatagtacagg |
16748974 |
T |
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| Q |
168 |
aattatgaaagtttgtaaaagaagataacaattgatagtgactactaccaatccccaaaagcacgcaggctttcccgtatcaccacaggtgaccccacta |
267 |
Q |
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| T |
16748973 |
aattatgaaagtttgtaaaagaagataacaattgatagtgactactaacaatccccaaaagcacgcaggcttccccgtatcaccacaggtgaccccacta |
16748874 |
T |
|
| Q |
268 |
aatcataacagaaagatagatgccatattccttctcattccttgtacttatataatcagctttctttttactcacgcatactccattgccacgttaccat |
367 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | |
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| T |
16748873 |
aatcataacagaaagataaatgccatattccttctcattccttgtacttatataatcagctttctttctactcacgcatacttcattgccacgttaccct |
16748774 |
T |
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| Q |
368 |
tctctgctcct |
378 |
Q |
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||| ||||||| |
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| T |
16748773 |
tctttgctcct |
16748763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 89 - 378
Target Start/End: Complemental strand, 14919700 - 14919411
Alignment:
| Q |
89 |
gaatgaaggaatgaaataagaaacaagagaatataatggaattattcagaatagtgatgataagctccaatagtacaggaattatgaaagtttgtaaaag |
188 |
Q |
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| T |
14919700 |
gaatgaaggaatgaaataagaaacaagagaatataatggaattattcagaatagtgataataagatccaatagtacaggaattatgaaagtttgtaaaag |
14919601 |
T |
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| Q |
189 |
aagataacaattgatagtgactactaccaatccccaaaagcacgcaggctttcccgtatcaccacaggtgaccccactaaatcataacagaaagatagat |
288 |
Q |
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| T |
14919600 |
aagataacaattgatagtgactactaacaatccccaaaagcacgcaggcttccccgtatcaccacaggtgaccccactaaatcataacagaaagataaat |
14919501 |
T |
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| Q |
289 |
gccatattccttctcattccttgtacttatataatcagctttctttttactcacgcatactccattgccacgttaccattctctgctcct |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||| |
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| T |
14919500 |
gccatattccttctcattccttgtacttatataatcagctttctttctactcacgcatacttcattgccacgttacccttctttgctcct |
14919411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 14851 - 14951
Alignment:
| Q |
66 |
tgtgatgggtttacagagtatgtgaatgaaggaatgaaataagaaac-aagagaatataatggaatt-attcagaatagtgatgataagctccaatagta |
163 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |
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| T |
14851 |
tgtgatgggtttacagagtatgcgaatgaaggaatgaaataagaaacaaagagaatataatggaattaattcagaatagtgataataagatccaatagta |
14950 |
T |
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| Q |
164 |
c |
164 |
Q |
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| T |
14951 |
c |
14951 |
T |
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