View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_low_45 (Length: 371)
Name: NF20179_low_45
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_45 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 7175563 - 7175277
Alignment:
| Q |
15 |
aaagtaacaaataactgaattttagtatgtggcagattttgcagtaaggcggacactatatctgctgctgtgttatttgtttacatcgccacatatatat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7175563 |
aaagtaacaaataactgaattttagtatgtggcagattttgcagtaaggcggacactatatctgctgctgtgttatttgtttgcatcgccacatatatat |
7175464 |
T |
|
| Q |
115 |
cgtttgagaggtgactgtcccgccaaacgctcctcgctctttgacaatcaaacagaacatgaaggtcatcttcataatttccatcacacatagaacacat |
214 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7175463 |
cgtttgagaggtgactgtcccgccaaatgctcctcgctctttgacaatcaaacagaacatgaaggtcatcttcataatttccatcacacatagaacacat |
7175364 |
T |
|
| Q |
215 |
agaggtacagttcactcttttatctaacagtttggcacgagttggtaagcatccccggcatattctccatatcaagttcttcacctt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7175363 |
agaggtacagttcactcttttatctaacagtttggcacgagttggtaagcatcccaggcatattctccatatcaagttcttcacctt |
7175277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 7175219 - 7175165
Alignment:
| Q |
302 |
attatcaccaatttcttccatacaaatccggtacgcgcttctaactgaataatgt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7175219 |
attatcaccaatttcttccatacaaatccggtacgcgcttctaacggaataatgt |
7175165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 26622105 - 26621819
Alignment:
| Q |
15 |
aaagtaacaaataactgaattttagtatgtggcagattttgcagtaaggcggacactatatctgctgctgtgttatttgtttacatcgccacatatatat |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
26622105 |
aaagtaacaaataactggattttagtatgtggcagattttgtagtaaggcaaacactatatctgctgatgtgttatttgtttgcatcgccacatatatat |
26622006 |
T |
|
| Q |
115 |
cgtttgagaggtgactgtcccgccaaacgctcctcgctctttgacaatcaaacagaacatgaaggtcatcttcataatttccatcacacatagaacacat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26622005 |
cgtttgagaggtgactgtcccgccaaacgctcctcgctctttgacaatcaaacaaaacatgaaggtcatcttcataatttccatcacacatagaacacac |
26621906 |
T |
|
| Q |
215 |
agaggtacagttcactcttttatctaacagtttggcacgagttggtaagcatccccggcatattctccatatcaagttcttcacctt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26621905 |
agaggtacagttcactcttttatctaacaatttggcacaagttggtaagcatccccgacatattctccatatcaagttcttcacctt |
26621819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University