View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_46 (Length: 370)
Name: NF20179_low_46
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 33923153 - 33922812
Alignment:
| Q |
13 |
aatatagtatcatattgagattactctgatgagta-aacattagtagtannnnnnncctatgaatattattaaaacatatacaaacatttatcaagttaa |
111 |
Q |
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| T |
33923153 |
aatatagtatcatattgagattactctgatgagagtaacattagcagtatttttt-cctatgaatattattaaaacatatacaaacatttatcaagttaa |
33923055 |
T |
|
| Q |
112 |
ttgagagataataactttgctgagcatcaaaataaaaatgcttcttttgcattcccctaaaaacaaaatgcttcttttgcattaacattgataaaatata |
211 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33923054 |
ttgagagataataactttgttgaacatcaaaataaaaatgcttcttttgcattcccctaaaaacaaaatgcttcttttgcattaacattgataaaatata |
33922955 |
T |
|
| Q |
212 |
ctgcacttttattataaggtgaacagtttaagttccttctagatagtctacccgtatgtatcaattaagttttttaaacacgtaaagttatgtcgacgaa |
311 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33922954 |
ttgcacttttagtataaggtgaacagtttaagttccttctagatagtctacccgtatgtatcaattaagttttttaaacacgtaaagttatgtcgacgaa |
33922855 |
T |
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| Q |
312 |
agccattcctaatctaatcccttgcattgaaaaatatataaac |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33922854 |
agccattcctaatctaatcccttgcattgaaaaatatataaac |
33922812 |
T |
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